Variant report

Variant	rs913830
Chromosome Location	chr20:16224418-16224419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1028948	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1411200	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2026113	0.80[ASN][1000 genomes]
rs2749748	0.81[ASN][1000 genomes]
rs4813214	0.80[ASN][1000 genomes]
rs4814457	0.80[ASN][1000 genomes]
rs6043817	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6080181	0.80[ASN][1000 genomes]
rs6080185	0.80[ASN][1000 genomes]
rs6105551	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6110980	0.81[ASN][1000 genomes]
rs6131801	0.86[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs6514663	0.86[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs883969	0.84[ASN][1000 genomes]
rs913829	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833930	chr20:16134347-16302763	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16217400-16226800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:16222800-16229000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr20:16224000-16224600	Enhancers	Fetal Heart	heart
4	chr20:16224200-16224600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr20:16224200-16224600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
6	chr20:16224200-16224600	Active TSS	NHDF-Ad	bronchial
7	chr20:16224200-16224800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr20:16224400-16224600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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