Variant report

Variant	rs914938
Chromosome Location	chr10:116300610-116300611
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116299755..116302305-chr10:116302434..116304411,2	MCF-7	breast:
2	chr10:116285513..116287019-chr10:116299308..116302056,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000099204	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10885572	1.00[YRI][hapmap]
rs10885575	0.90[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]
rs11196779	0.88[AFR][1000 genomes]
rs11196780	0.90[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]
rs11196781	1.00[YRI][hapmap]
rs12569428	1.00[YRI][hapmap]
rs17092023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999567	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2145894	0.82[LWK][hapmap]
rs2483532	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483561	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2483571	1.00[YRI][hapmap]
rs2483582	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs2483587	0.90[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]
rs2483596	0.87[MKK][hapmap]
rs2497713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497714	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2497717	1.00[YRI][hapmap]
rs2497719	0.91[MKK][hapmap]
rs4255463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4514325	1.00[YRI][hapmap]
rs56001223	0.88[AFR][1000 genomes]
rs867736	1.00[YRI][hapmap]
rs883768	0.90[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116287000-116301200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:116287200-116301600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:116287200-116307200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:116287400-116300800	Weak transcription	Fetal Intestine Large	intestine
5	chr10:116287400-116303200	Weak transcription	Brain Anterior Caudate	brain
6	chr10:116287400-116303800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:116287400-116310600	Weak transcription	Brain Angular Gyrus	brain
8	chr10:116287400-116310600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:116292400-116303800	Weak transcription	Pancreas	Pancrea
10	chr10:116294000-116300800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr10:116296600-116301400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr10:116296600-116303600	Enhancers	Fetal Thymus	thymus
13	chr10:116296800-116303400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:116297000-116301000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr10:116297400-116300800	Weak transcription	HSMM	muscle
16	chr10:116297600-116305200	Enhancers	Dnd41	blood
17	chr10:116297600-116308600	Enhancers	Primary B cells from peripheral blood	blood
18	chr10:116297800-116308600	Enhancers	Stomach Mucosa	stomach
19	chr10:116298000-116301800	Enhancers	GM12878-XiMat	blood
20	chr10:116298000-116302800	Enhancers	Right Atrium	heart
21	chr10:116298000-116308800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:116298200-116302600	Weak transcription	HUVEC	blood vessel
23	chr10:116298200-116307800	Strong transcription	Fetal Intestine Small	intestine
24	chr10:116298400-116303600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:116298400-116307200	Strong transcription	Liver	Liver
26	chr10:116298400-116307600	Weak transcription	Brain Substantia Nigra	brain
27	chr10:116298400-116310200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:116298600-116300800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr10:116298600-116301000	Enhancers	Thymus	Thymus
30	chr10:116298600-116303200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:116298600-116303400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:116298600-116303400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:116298600-116303400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr10:116298600-116304800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:116298600-116311600	Weak transcription	Gastric	stomach
36	chr10:116298800-116300800	Weak transcription	HMEC	breast
37	chr10:116298800-116302400	Weak transcription	Lung	lung
38	chr10:116298800-116302400	Weak transcription	Spleen	Spleen
39	chr10:116298800-116303400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr10:116298800-116310400	Weak transcription	Small Intestine	intestine
41	chr10:116298800-116310600	Weak transcription	Colonic Mucosa	Colon
42	chr10:116299400-116301000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:116299400-116301400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr10:116299600-116300800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr10:116299600-116308200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:116299800-116302000	Weak transcription	Primary B cells from cord blood	blood
47	chr10:116299800-116308800	Genic enhancers	Left Ventricle	heart
48	chr10:116300000-116301200	Weak transcription	Fetal Lung	lung
49	chr10:116300000-116302000	Flanking Active TSS	Primary T cells from cord blood	blood
50	chr10:116300000-116302000	Enhancers	Fetal Muscle Trunk	muscle

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