Variant report

Variant	rs916846
Chromosome Location	chr7:25346821-25346822
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10233497	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11760705	0.83[EUR][1000 genomes]
rs11762772	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766628	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770234	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60568304	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61361029	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67112407	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs721317	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25339600-25355000	Weak transcription	Fetal Brain Male	brain
2	chr7:25343200-25347000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr7:25343200-25347600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:25343200-25348000	Weak transcription	Pancreas	Pancrea
5	chr7:25343600-25348400	Weak transcription	Fetal Kidney	kidney
6	chr7:25343600-25353800	Weak transcription	Ovary	ovary
7	chr7:25343800-25347600	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:25343800-25347800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:25343800-25347800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr7:25343800-25348400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr7:25344400-25347400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr7:25344400-25347800	Weak transcription	Brain Germinal Matrix	brain
13	chr7:25344600-25348000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:25344600-25357200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:25344800-25347000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:25344800-25347800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:25344800-25347800	Weak transcription	Fetal Muscle Leg	muscle
18	chr7:25344800-25348400	Weak transcription	Fetal Intestine Large	intestine
19	chr7:25344800-25348600	Weak transcription	Fetal Lung	lung
20	chr7:25344800-25349000	Weak transcription	Fetal Intestine Small	intestine
21	chr7:25345000-25348200	Weak transcription	Fetal Stomach	stomach
22	chr7:25345000-25351000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:25346000-25347600	Weak transcription	Fetal Heart	heart
24	chr7:25346000-25348200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr7:25346800-25349400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr7:25346800-25349800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links