Variant report

Variant	rs917539
Chromosome Location	chr17:15034864-15034865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:15034854..15037130-chr17:15046281..15047944,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1002239	0.94[ASN][1000 genomes]
rs1076385	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11651331	0.84[ASN][1000 genomes]
rs11654880	0.90[EUR][1000 genomes]
rs2041267	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2191115	0.92[EUR][1000 genomes]
rs2191116	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2875084	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2875100	0.94[ASN][1000 genomes]
rs4427846	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4792574	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7209181	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7218389	0.83[ASN][1000 genomes]
rs7218793	0.83[ASN][1000 genomes]
rs758485	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs758489	0.81[EUR][1000 genomes]
rs763614	0.85[EUR][1000 genomes]
rs8081018	0.83[EUR][1000 genomes]
rs917538	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs983292	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs983293	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9899643	0.94[ASN][1000 genomes]
rs9906655	0.94[ASN][1000 genomes]
rs9913491	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064686	chr17:14897967-15046005	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv907700	chr17:15026800-15059276	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv457680	chr17:15028005-15058236	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv457681	chr17:15028005-15058236	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv574432	chr17:15028005-15058236	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv574433	chr17:15034841-15058236	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv457682	chr17:15034841-15059276	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv457683	chr17:15034841-15059276	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv574434	chr17:15034841-15059276	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv574435	chr17:15034841-15060382	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv907701	chr17:15034841-15060382	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv907702	chr17:15034841-15065191	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15033400-15036000	Enhancers	Colon Smooth Muscle	Colon
2	chr17:15034800-15035400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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