Variant report

Variant	rs918373
Chromosome Location	chr5:164563089-164563090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1363110	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1363112	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17072563	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17072825	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17072886	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1990866	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4397144	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs991329	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995060	chr5:163660200-164620500	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164557800-164565000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:164557800-164570800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:164558000-164564800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:164558200-164564800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:164558200-164565000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:164562200-164563200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:164562200-164564800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:164562600-164563800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:164562800-164564400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:164562800-164565200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:164563000-164564000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr5:164563000-164564800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:164563000-164564800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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