Variant report

Variant	rs919070
Chromosome Location	chr8:95681424-95681425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95680054..95682233-chr8:95729748..95731453,2	MCF-7	breast:
2	chr8:95649858..95656937-chr8:95675336..95684799,15	MCF-7	breast:
3	chr8:95681366..95684184-chr8:95686509..95688436,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261437	Chromatin interaction
ENSG00000104413	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10112364	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956924	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1365204	1.00[ASN][1000 genomes]
rs1426171	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1820418	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033073	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3764239	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6471456	1.00[ASN][1000 genomes]
rs7826670	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95655600-95701200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:95656400-95701000	Strong transcription	H1 Cell Line	embryonic stem cell
3	chr8:95656400-95713000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
4	chr8:95656600-95699200	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr8:95656600-95701200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:95656600-95701600	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:95656600-95703200	Weak transcription	Stomach Mucosa	stomach
8	chr8:95657200-95701200	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:95657600-95699400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:95659000-95689800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:95660600-95698000	Weak transcription	Fetal Stomach	stomach
12	chr8:95662600-95694600	Weak transcription	Lung	lung
13	chr8:95663800-95690400	Weak transcription	Right Atrium	heart
14	chr8:95664600-95692600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr8:95665600-95685400	Weak transcription	Colonic Mucosa	Colon
16	chr8:95667400-95688400	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr8:95668000-95687000	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr8:95668400-95693600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr8:95670800-95688600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr8:95670800-95690400	Strong transcription	HMEC	breast
21	chr8:95670800-95698800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:95670800-95703000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr8:95671000-95688600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr8:95675000-95687000	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr8:95675400-95682000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr8:95675400-95682000	Strong transcription	Fetal Intestine Small	intestine
27	chr8:95675400-95688600	Strong transcription	Fetal Intestine Large	intestine
28	chr8:95675600-95688600	Strong transcription	Duodenum Mucosa	Duodenum
29	chr8:95675800-95683800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
30	chr8:95679600-95690400	Strong transcription	NHEK	skin
31	chr8:95679600-95699000	Strong transcription	H9 Cell Line	embryonic stem cell
32	chr8:95679800-95686800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
33	chr8:95680200-95682000	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr8:95680600-95682000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr8:95680600-95694200	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr8:95680600-95718400	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr8:95680800-95682000	Strong transcription	Esophagus	oesophagus
38	chr8:95680800-95683400	Weak transcription	Placenta	Placenta
39	chr8:95681000-95682000	Strong transcription	Pancreas	Pancrea
40	chr8:95681200-95681800	Strong transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr8:95681200-95681800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr8:95681400-95681600	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr8:95681400-95704400	Weak transcription	Gastric	stomach

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