Variant report

Variant rs920160
Chromosome Location chr3:52157726-52157727
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52110600-52179400 Weak transcription Brain Germinal Matrix brain
2 chr3:52126200-52160600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr3:52133200-52162000 Weak transcription Placenta Amnion Placenta Amnion
4 chr3:52136800-52187200 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr3:52140400-52178200 Strong transcription Dnd41 blood
6 chr3:52140600-52160800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr3:52144200-52163600 Weak transcription Aorta Aorta
8 chr3:52146200-52162200 Weak transcription Gastric stomach
9 chr3:52148600-52179800 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr3:52151000-52161000 Strong transcription Thymus Thymus
11 chr3:52151600-52160000 Strong transcription H1 Cell Line embryonic stem cell
12 chr3:52152200-52164400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr3:52152400-52160800 Strong transcription Cortex derived primary cultured neurospheres brain
14 chr3:52152800-52158000 Weak transcription Fetal Brain Male brain
15 chr3:52152800-52159000 Strong transcription HUES64 Cell Line embryonic stem cell
16 chr3:52152800-52160800 Strong transcription iPS-20b Cell Line embryonic stem cell
17 chr3:52153200-52158200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr3:52153200-52161200 Strong transcription H9 Cell Line embryonic stem cell
19 chr3:52153200-52161200 Strong transcription HUES6 Cell Line embryonic stem cell
20 chr3:52153400-52158600 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr3:52153400-52159800 Strong transcription iPS-18 Cell Line embryonic stem cell
22 chr3:52153600-52158000 Enhancers Colon Smooth Muscle Colon
23 chr3:52153600-52161000 Strong transcription HUES48 Cell Line embryonic stem cell
24 chr3:52154000-52159600 Strong transcription NHLF lung
25 chr3:52154200-52157800 Enhancers Primary Natural Killer cells fromperipheralblood blood
26 chr3:52154400-52157800 Enhancers Primary B cells from peripheral blood blood
27 chr3:52154400-52159000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
28 chr3:52154400-52160400 Strong transcription Hela-S3 cervix
29 chr3:52154800-52158000 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
30 chr3:52154800-52158200 Strong transcription HepG2 liver
31 chr3:52155000-52158400 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
32 chr3:52155200-52158000 Strong transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr3:52155200-52180000 Weak transcription Fetal Intestine Large intestine
34 chr3:52155200-52187200 Weak transcription Colonic Mucosa Colon
35 chr3:52155400-52157800 Genic enhancers HMEC breast
36 chr3:52155400-52159200 Strong transcription iPS-15b Cell Line embryonic stem cell
37 chr3:52155400-52161200 Strong transcription Fetal Intestine Small intestine
38 chr3:52155400-52162000 Weak transcription Stomach Mucosa stomach
39 chr3:52155600-52162000 Weak transcription NH-A brain
40 chr3:52155800-52159800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr3:52155800-52162200 Weak transcription Ovary ovary
42 chr3:52156000-52157800 Genic enhancers Primary hematopoietic stem cells short term culture blood
43 chr3:52156000-52158400 Strong transcription A549 lung
44 chr3:52156000-52159400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr3:52156200-52158200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
46 chr3:52156200-52158200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
47 chr3:52156200-52159600 Weak transcription HSMM muscle
48 chr3:52156200-52160400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr3:52156200-52160600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr3:52156200-52162000 Weak transcription HUVEC blood vessel

Quick Search:


  
Input of quick search could be:

what's new

Quick links