Variant report

Variant	rs920208
Chromosome Location	chr4:147971076-147971077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10446782	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11100938	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11100939	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12711442	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13104463	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1437273	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17657337	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35242988	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4835366	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6835455	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs714358	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7699426	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1016598	chr4:147931134-148012064	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs920208	ANAPC10	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147967800-147971800	Weak transcription	Fetal Kidney	kidney
2	chr4:147968400-147971800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:147970400-147971200	Enhancers	Stomach Smooth Muscle	stomach
4	chr4:147970600-147971600	Enhancers	Aorta	Aorta
5	chr4:147970600-147972800	Enhancers	Psoas Muscle	Psoas
6	chr4:147970600-147972800	Enhancers	Hela-S3	cervix
7	chr4:147970800-147972200	Enhancers	Fetal Heart	heart
8	chr4:147970800-147972600	Enhancers	Fetal Lung	lung
9	chr4:147971000-147971200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:147971000-147971400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:147971000-147971400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:147971000-147971800	Enhancers	Fetal Muscle Leg	muscle
13	chr4:147971000-147972000	Enhancers	Colon Smooth Muscle	Colon
14	chr4:147971000-147972200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:147971000-147972200	Enhancers	NHLF	lung
16	chr4:147971000-147972400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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