Variant report

Variant	rs921594
Chromosome Location	chr6:141486123-141486124
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:141466947..141468620-chr6:141486006..141488236,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1452996	1.00[AFR][1000 genomes]
rs2328183	1.00[AMR][1000 genomes]
rs57348706	1.00[AMR][1000 genomes]
rs57544351	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57859412	1.00[AMR][1000 genomes]
rs58978254	1.00[AMR][1000 genomes]
rs59237038	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59941303	1.00[AMR][1000 genomes]
rs6903783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73570227	0.82[AFR][1000 genomes]
rs73570244	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73572139	1.00[AMR][1000 genomes]
rs73572969	1.00[AMR][1000 genomes]
rs73573955	0.81[AFR][1000 genomes]
rs73578853	1.00[AMR][1000 genomes]
rs73583334	1.00[AMR][1000 genomes]
rs73587219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73587265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588090	0.87[AFR][1000 genomes]
rs7738427	1.00[AMR][1000 genomes]
rs7754454	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019459	chr6:141051249-141862727	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538453	chr6:141051249-141862727	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532070	chr6:141057326-141865359	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1025922	chr6:141090901-141865360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538454	chr6:141090901-141865360	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1028540	chr6:141121435-141740831	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv604780	chr6:141126080-141740918	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1033387	chr6:141130072-141742682	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1030686	chr6:141130072-141749079	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1024981	chr6:141134064-141742682	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv916684	chr6:141149976-141682411	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv532071	chr6:141150099-141682503	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1035133	chr6:141156919-141650334	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1029033	chr6:141156919-141740831	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv886720	chr6:141328865-141725335	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv886721	chr6:141328865-141739208	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
18	nsv830822	chr6:141387803-141542998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv886725	chr6:141428255-141718812	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv886726	chr6:141428255-141764919	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141475200-141493800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:141480400-141490600	Weak transcription	HSMMtube	muscle
3	chr6:141484400-141486400	Enhancers	Ovary	ovary
4	chr6:141484600-141486600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:141484600-141487000	Enhancers	Stomach Mucosa	stomach
6	chr6:141484600-141487400	Enhancers	Fetal Lung	lung
7	chr6:141485000-141487200	Enhancers	Fetal Intestine Small	intestine
8	chr6:141485200-141486400	Enhancers	Small Intestine	intestine
9	chr6:141485200-141486800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:141485200-141487000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:141485200-141487200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:141485400-141492000	Weak transcription	Left Ventricle	heart
13	chr6:141485600-141486400	Flanking Active TSS	Liver	Liver
14	chr6:141485600-141486400	Enhancers	Duodenum Mucosa	Duodenum
15	chr6:141485600-141486800	Enhancers	H9 Cell Line	embryonic stem cell
16	chr6:141485600-141486800	Enhancers	Fetal Intestine Large	intestine
17	chr6:141485600-141487000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:141485600-141487200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:141485600-141488200	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr6:141485800-141486200	Flanking Active TSS	Fetal Heart	heart
21	chr6:141485800-141486400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:141485800-141486400	Enhancers	Brain Hippocampus Middle	brain
23	chr6:141485800-141486400	Enhancers	Fetal Brain Female	brain
24	chr6:141485800-141486400	Enhancers	Placenta Amnion	Placenta Amnion
25	chr6:141485800-141486800	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:141485800-141486800	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr6:141486000-141486200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:141486000-141486600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:141486000-141486800	Enhancers	H1 Cell Line	embryonic stem cell
30	chr6:141486000-141487200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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