Variant report

Variant	rs921875
Chromosome Location	chr11:86723784-86723785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10898563	1.00[ASW][hapmap]
rs12270673	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12575890	1.00[ASW][hapmap]
rs12790473	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs186198	0.88[YRI][hapmap]
rs2124577	0.81[AMR][1000 genomes]
rs2124579	0.81[JPT][hapmap];0.81[MEX][hapmap]
rs2445537	0.81[AMR][1000 genomes]
rs2445538	0.89[JPT][hapmap];0.81[AMR][1000 genomes]
rs2445543	0.90[JPT][hapmap]
rs2445549	0.81[JPT][hapmap];1.00[LWK][hapmap];0.81[MEX][hapmap]
rs2445552	0.81[JPT][hapmap];1.00[LWK][hapmap];0.81[MEX][hapmap]
rs2445564	0.81[JPT][hapmap]
rs2445565	0.81[JPT][hapmap]
rs2445581	0.81[JPT][hapmap]
rs2512347	0.81[JPT][hapmap]
rs2512364	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2512370	0.91[JPT][hapmap];0.85[AMR][1000 genomes]
rs2512373	0.85[AMR][1000 genomes]
rs2512378	0.84[CEU][hapmap]
rs2512392	0.81[JPT][hapmap]
rs2512478	0.91[JPT][hapmap]
rs2512493	0.81[JPT][hapmap]
rs2512498	0.83[AMR][1000 genomes]
rs2512502	1.00[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2513206	0.81[AMR][1000 genomes]
rs2513219	0.81[JPT][hapmap];1.00[LWK][hapmap]
rs2513225	0.81[JPT][hapmap]
rs2513232	0.82[MEX][hapmap]
rs3740659	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4944657	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7934461	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965467	0.81[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs921875	FZD4	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86711200-86727400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:86719000-86723800	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:86719400-86723800	Weak transcription	Ovary	ovary
4	chr11:86719600-86724200	Weak transcription	Adipose Nuclei	Adipose
5	chr11:86719600-86724400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:86722800-86724800	Enhancers	HepG2	liver
7	chr11:86723400-86723800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:86723600-86725600	Enhancers	Colon Smooth Muscle	Colon
9	chr11:86723600-86726000	Enhancers	Fetal Stomach	stomach

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