Variant report

Variant	rs921928
Chromosome Location	chr5:80518217-80518218
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10041063	1.00[CHB][hapmap]
rs10078279	1.00[CHB][hapmap]
rs10514213	1.00[CHB][hapmap]
rs1055383	1.00[CHB][hapmap]
rs10942945	1.00[CHB][hapmap]
rs11950033	1.00[CHB][hapmap]
rs1566432	1.00[CHB][hapmap]
rs17294418	1.00[CHB][hapmap]
rs2270823	1.00[CHB][hapmap]
rs2897389	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs2897390	1.00[CHB][hapmap]
rs4703827	1.00[CHB][hapmap]
rs4704707	1.00[CHB][hapmap]
rs4704710	1.00[CHB][hapmap]
rs6866499	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs6885028	1.00[CHB][hapmap]
rs6893467	1.00[CHB][hapmap]
rs7709071	1.00[CHB][hapmap]
rs7709149	1.00[CHB][hapmap]
rs7720009	1.00[CHB][hapmap]
rs7734902	1.00[CHB][hapmap]
rs9293841	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv598750	chr5:80503528-80599578	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80464200-80528400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:80465200-80528200	Weak transcription	Ovary	ovary
3	chr5:80491000-80520200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:80491000-80528400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr5:80491200-80530000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:80491400-80528400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:80492000-80528600	Weak transcription	Left Ventricle	heart
8	chr5:80498000-80528800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:80498800-80530000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr5:80505400-80527800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:80506000-80525400	Weak transcription	Brain Angular Gyrus	brain
12	chr5:80506000-80530000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr5:80506200-80520400	Weak transcription	Brain Hippocampus Middle	brain
14	chr5:80506400-80528000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr5:80507600-80528200	Weak transcription	HepG2	liver
16	chr5:80508000-80520400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr5:80509000-80528400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:80509200-80528800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr5:80509400-80530000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr5:80509600-80518400	Weak transcription	Fetal Intestine Small	intestine
21	chr5:80509800-80520000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr5:80510600-80521200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr5:80510600-80528800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr5:80510800-80521600	Weak transcription	Adipose Nuclei	Adipose
25	chr5:80514600-80518600	Strong transcription	Primary T cells from cord blood	blood
26	chr5:80514600-80523200	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr5:80514800-80518400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:80515600-80524000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr5:80516000-80520200	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr5:80516400-80528600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr5:80518200-80519000	Strong transcription	Primary T helper cells PMA-I stimulated	--

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