Variant report

Variant	rs922512
Chromosome Location	chr5:117627547-117627548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10040506	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10042731	0.82[AMR][1000 genomes]
rs10519541	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes]
rs1382730	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1382737	0.82[AMR][1000 genomes]
rs1871366	0.87[ASN][1000 genomes]
rs2416509	0.81[AMR][1000 genomes]
rs28473044	0.82[AMR][1000 genomes]
rs28708657	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41456648	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes]
rs4412141	0.82[AMR][1000 genomes]
rs4555865	0.82[AMR][1000 genomes]
rs4635967	0.82[AMR][1000 genomes]
rs60815054	0.82[AMR][1000 genomes]
rs61184343	0.82[AMR][1000 genomes]
rs6595105	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6595107	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6860878	0.82[AMR][1000 genomes]
rs6877140	0.82[AMR][1000 genomes]
rs6877628	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs6898040	0.82[AMR][1000 genomes]
rs72786862	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9327069	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027428	chr5:117072745-118036353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv537877	chr5:117072745-118036353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1067621	chr5:117102544-118036352	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv531292	chr5:117102544-118036352	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	esv2422395	chr5:117442806-117887910	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv882762	chr5:117499480-117706786	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv432802	chr5:117612408-117921244	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:117627400-117627600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:117627400-117627600	Enhancers	Pancreas	Pancrea

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