Variant report

Variant	rs923012
Chromosome Location	chr15:59703391-59703392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr15:59703304-59704171	GM12878	blood:	n/a	n/a
2	NFIC	chr15:59703391-59703925	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59702973..59705551-chr15:59735416..59737691,2	K562	blood:

Variant related genes	Relation type
ENSG00000259674	TF binding region
ENSG00000157470	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1385115	1.00[EUR][1000 genomes]
rs16941480	1.00[EUR][1000 genomes]
rs61340984	1.00[EUR][1000 genomes]
rs73432622	1.00[EUR][1000 genomes]
rs73432625	1.00[EUR][1000 genomes]
rs8024829	1.00[EUR][1000 genomes]
rs8037050	1.00[EUR][1000 genomes]
rs960025	1.00[EUR][1000 genomes]
rs960026	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv934082	chr15:59608605-59733211	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv904275	chr15:59648633-59726610	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	n/a
4	nsv904276	chr15:59648633-59743010	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	n/a
5	nsv904277	chr15:59666992-59705005	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
6	nsv524569	chr15:59666992-59712427	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59692800-59704800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:59693000-59704800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:59693000-59704800	Weak transcription	Spleen	Spleen
4	chr15:59693000-59705000	Weak transcription	Fetal Thymus	thymus
5	chr15:59695200-59707000	Enhancers	Primary B cells from peripheral blood	blood
6	chr15:59699200-59706400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr15:59699400-59704200	Enhancers	Primary B cells from cord blood	blood
8	chr15:59699400-59705200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:59700200-59704200	Weak transcription	Placenta	Placenta
10	chr15:59700400-59705200	Weak transcription	Pancreas	Pancrea
11	chr15:59701400-59703600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:59701400-59706000	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr15:59702200-59703400	Enhancers	Fetal Intestine Large	intestine
14	chr15:59702200-59703600	Enhancers	Primary hematopoietic stem cells	blood
15	chr15:59702200-59703600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr15:59702200-59706000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:59702400-59703600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr15:59702400-59703600	Flanking Active TSS	A549	lung
19	chr15:59702400-59703600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr15:59702400-59704000	Enhancers	Fetal Kidney	kidney
21	chr15:59702600-59703800	Enhancers	Adipose Nuclei	Adipose
22	chr15:59702800-59703400	Weak transcription	Left Ventricle	heart
23	chr15:59702800-59704200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr15:59702800-59704800	Weak transcription	Small Intestine	intestine
25	chr15:59703000-59703400	Weak transcription	Colonic Mucosa	Colon
26	chr15:59703000-59703400	Enhancers	GM12878-XiMat	blood
27	chr15:59703000-59703600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr15:59703000-59703600	Enhancers	Liver	Liver
29	chr15:59703000-59703600	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr15:59703000-59704600	Enhancers	HepG2	liver
31	chr15:59703000-59705000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:59703000-59705000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr15:59703000-59705200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr15:59703200-59704200	Weak transcription	Stomach Mucosa	stomach
35	chr15:59703200-59704600	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr15:59703200-59706200	Enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links