Variant report

Variant rs9236
Chromosome Location chr1:154916602-154916603
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:154910400-154916800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
2 chr1:154910400-154917000 Enhancers Primary hematopoietic stem cells blood
3 chr1:154910400-154920000 Weak transcription Aorta Aorta
4 chr1:154910400-154923000 Weak transcription H9 Cell Line embryonic stem cell
5 chr1:154910400-154925000 Weak transcription Psoas Muscle Psoas
6 chr1:154910600-154916800 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:154910600-154927200 Weak transcription Fetal Kidney kidney
8 chr1:154910800-154927200 Weak transcription Muscle Satellite Cultured Cells --
9 chr1:154910800-154927200 Weak transcription Pancreatic Islets Pancreatic Islet
10 chr1:154911000-154921400 Weak transcription NHLF lung
11 chr1:154911400-154917200 Weak transcription Rectal Smooth Muscle rectum
12 chr1:154911800-154927400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr1:154911800-154927400 Weak transcription NHEK skin
14 chr1:154912200-154917600 Enhancers Adipose Nuclei Adipose
15 chr1:154912400-154917200 Enhancers Primary monocytes fromperipheralblood blood
16 chr1:154912600-154917000 Flanking Active TSS GM12878-XiMat blood
17 chr1:154912600-154917600 Enhancers Brain Substantia Nigra brain
18 chr1:154912600-154917800 Enhancers Fetal Lung lung
19 chr1:154912600-154917800 Enhancers K562 blood
20 chr1:154912600-154919200 Genic enhancers Fetal Muscle Leg muscle
21 chr1:154912800-154917800 Enhancers Stomach Mucosa stomach
22 chr1:154913000-154920000 Weak transcription HUES6 Cell Line embryonic stem cell
23 chr1:154913000-154927600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr1:154913200-154916800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr1:154913200-154927400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr1:154913400-154917800 Enhancers Fetal Intestine Large intestine
27 chr1:154913400-154923000 Weak transcription HUES48 Cell Line embryonic stem cell
28 chr1:154913400-154925600 Weak transcription Brain Germinal Matrix brain
29 chr1:154913400-154927000 Weak transcription HUES64 Cell Line embryonic stem cell
30 chr1:154913600-154916800 Enhancers Primary mononuclear cells fromperipheralblood Blood
31 chr1:154913600-154916800 Enhancers Brain Hippocampus Middle brain
32 chr1:154913600-154918000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr1:154913800-154916800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr1:154913800-154916800 Genic enhancers Thymus Thymus
35 chr1:154913800-154917800 Enhancers Placenta Placenta
36 chr1:154913800-154918600 Enhancers Liver Liver
37 chr1:154914000-154927400 Weak transcription iPS-20b Cell Line embryonic stem cell
38 chr1:154914200-154917000 Enhancers Primary T killer naive cells fromperipheralblood blood
39 chr1:154914200-154918200 Genic enhancers Ganglion Eminence derived primary cultured neurospheres brain
40 chr1:154914200-154927400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
41 chr1:154914400-154917200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
42 chr1:154914400-154917400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr1:154914400-154920000 Weak transcription H1 Cell Line embryonic stem cell
44 chr1:154914400-154923400 Weak transcription iPS-18 Cell Line embryonic stem cell
45 chr1:154914800-154917000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr1:154914800-154917200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr1:154914800-154917800 Enhancers Rectal Mucosa Donor 31 rectum
48 chr1:154914800-154919000 Genic enhancers Fetal Intestine Small intestine
49 chr1:154914800-154919000 Genic enhancers Fetal Muscle Trunk muscle
50 chr1:154915000-154917200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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