Variant report

Variant	rs923635
Chromosome Location	chr5:79252846-79252847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11749003	0.86[EUR][1000 genomes]
rs12054701	0.84[AFR][1000 genomes]
rs2404707	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2451931	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34727832	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021113	chr5:79034662-79289828	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1822393	chr5:79195538-79260489	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79250800-79253400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:79250800-79253600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:79251000-79254000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:79251600-79253200	Enhancers	HSMMtube	muscle
5	chr5:79251600-79253400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:79251800-79257600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:79252400-79257400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:79252600-79256800	Weak transcription	Fetal Muscle Leg	muscle
9	chr5:79252600-79257800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:79252600-79258200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr5:79252800-79253600	Enhancers	HMEC	breast
12	chr5:79252800-79253600	Enhancers	NHEK	skin
13	chr5:79252800-79258000	Weak transcription	NH-A	brain
14	chr5:79252800-79258200	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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