Variant report

Variant	rs923745
Chromosome Location	chr3:111843883-111843884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11824	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13066495	0.80[EUR][1000 genomes]
rs13074229	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340163	0.86[EUR][1000 genomes]
rs340165	0.94[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs340172	0.94[CHB][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3856723	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682355	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[ASN][1000 genomes]
rs4682357	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs729641	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs746026	0.82[EUR][1000 genomes]
rs746027	0.82[EUR][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111810400-111852000	Weak transcription	Esophagus	oesophagus
2	chr3:111812000-111844000	Weak transcription	Colonic Mucosa	Colon
3	chr3:111812000-111845600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:111812200-111853000	Weak transcription	Right Ventricle	heart
5	chr3:111819600-111847800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:111822000-111844600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:111825800-111844400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:111830600-111853200	Weak transcription	Lung	lung
9	chr3:111830800-111845400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:111832000-111844600	Weak transcription	Hela-S3	cervix
11	chr3:111833200-111844000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr3:111834200-111853800	Weak transcription	Fetal Intestine Small	intestine
13	chr3:111834400-111848000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr3:111835800-111844400	Weak transcription	Fetal Heart	heart
15	chr3:111835800-111849600	Weak transcription	Small Intestine	intestine
16	chr3:111836200-111844200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr3:111836200-111845000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:111836200-111849200	Weak transcription	Aorta	Aorta
19	chr3:111836600-111846400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr3:111838400-111845400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:111838800-111844400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr3:111838800-111845400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:111839000-111844200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr3:111839000-111845200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr3:111839000-111845200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:111839000-111845600	Weak transcription	Adipose Nuclei	Adipose
27	chr3:111839000-111853000	Weak transcription	Left Ventricle	heart
28	chr3:111839400-111844000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:111839600-111845400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr3:111839600-111847400	Weak transcription	HMEC	breast
31	chr3:111840600-111845400	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr3:111840800-111844000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr3:111840800-111844200	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr3:111840800-111844400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr3:111840800-111845400	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr3:111840800-111847000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:111840800-111849200	Weak transcription	Gastric	stomach
38	chr3:111840800-111855800	Weak transcription	NH-A	brain
39	chr3:111841000-111846600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr3:111841200-111845600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr3:111841400-111845200	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr3:111841600-111845000	Genic enhancers	Primary B cells from peripheral blood	blood
43	chr3:111841800-111844000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
44	chr3:111841800-111844200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr3:111842000-111844400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr3:111842000-111844600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr3:111842000-111845200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:111842600-111844800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr3:111842600-111845000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr3:111842600-111845200	Weak transcription	NHEK	skin

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