Variant report

Variant	rs923922
Chromosome Location	chr9:14780937-14780938
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:14778974-14781709	HepG2	liver:	n/a	n/a
2	FOSL2	chr9:14780919-14781203	HepG2	liver:	n/a	n/a
3	MXI1	chr9:14780095-14781232	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
FREM1	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10117526	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17219005	0.84[EUR][1000 genomes]
rs2291680	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7044994	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7849041	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7852222	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs923921	0.88[CHB][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv3362157	chr9:14542189-14791977	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1025566	chr9:14687088-14791199	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1023955	chr9:14754010-14800259	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2761502	chr9:14757877-14827373	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv831518	chr9:14760638-14953501	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv892615	chr9:14761260-14782367	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14745000-14809800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr9:14748800-14790000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:14755800-14812400	Weak transcription	Pancreas	Pancrea
4	chr9:14758400-14793400	Weak transcription	Aorta	Aorta
5	chr9:14764800-14809600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:14766600-14787400	Weak transcription	Fetal Intestine Large	intestine
7	chr9:14768600-14808800	Weak transcription	Fetal Intestine Small	intestine
8	chr9:14769000-14783000	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:14773400-14796400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr9:14776200-14782400	Weak transcription	HepG2	liver
11	chr9:14776200-14794000	Weak transcription	Fetal Stomach	stomach
12	chr9:14776400-14782200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:14776400-14782400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr9:14779000-14782000	Enhancers	Fetal Brain Male	brain
15	chr9:14779000-14782000	Enhancers	Fetal Muscle Leg	muscle
16	chr9:14779200-14798600	Strong transcription	Fetal Kidney	kidney
17	chr9:14779400-14781600	Enhancers	Fetal Brain Female	brain
18	chr9:14779600-14781200	Enhancers	Psoas Muscle	Psoas
19	chr9:14779800-14781400	Enhancers	Brain Germinal Matrix	brain
20	chr9:14779800-14789000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:14779800-14853200	Weak transcription	Placenta	Placenta
22	chr9:14780000-14781200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr9:14780200-14782400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr9:14780400-14781000	Enhancers	HSMM	muscle
25	chr9:14780400-14781200	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr9:14780400-14781200	Enhancers	HSMMtube	muscle
27	chr9:14780400-14782600	Weak transcription	Adipose Nuclei	Adipose
28	chr9:14780400-14782800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr9:14780400-14795800	Weak transcription	Left Ventricle	heart
30	chr9:14780400-14843200	Weak transcription	Fetal Heart	heart
31	chr9:14780800-14783400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr9:14780800-14785200	Strong transcription	Fetal Lung	lung

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