Variant report

Variant	rs924576
Chromosome Location	chr3:143149132-143149133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10513201	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs16846341	0.81[CEU][hapmap]
rs16853522	0.82[CEU][hapmap]
rs16853578	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs3860228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56078024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6770293	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs6782465	0.81[CEU][hapmap]
rs73144769	0.83[EUR][1000 genomes]
rs73144770	0.83[EUR][1000 genomes]
rs73144771	0.83[EUR][1000 genomes]
rs73144772	0.84[EUR][1000 genomes]
rs73144774	0.84[EUR][1000 genomes]
rs73144777	0.84[EUR][1000 genomes]
rs7374585	0.91[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1011088	chr3:143135891-143163169	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143140000-143150000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:143142000-143150200	Enhancers	Dnd41	blood
3	chr3:143143200-143161600	Weak transcription	Primary T cells from cord blood	blood
4	chr3:143145600-143149800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr3:143145600-143152400	Weak transcription	Small Intestine	intestine
6	chr3:143145800-143151000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:143146600-143149800	Enhancers	Primary B cells from peripheral blood	blood
8	chr3:143147600-143164200	Enhancers	Fetal Thymus	thymus
9	chr3:143147800-143155600	Weak transcription	Thymus	Thymus
10	chr3:143148200-143149800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:143148200-143150800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:143148400-143149200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr3:143148400-143149200	Enhancers	Duodenum Mucosa	Duodenum
14	chr3:143148400-143149400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr3:143148400-143149400	Enhancers	Stomach Mucosa	stomach
16	chr3:143148400-143149400	Enhancers	HSMMtube	muscle
17	chr3:143148400-143149600	Enhancers	H1 Cell Line	embryonic stem cell
18	chr3:143148400-143149600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:143148400-143149600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr3:143148400-143149600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr3:143148400-143149800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr3:143148400-143150000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:143148400-143150200	Enhancers	K562	blood
24	chr3:143148600-143149200	Enhancers	GM12878-XiMat	blood
25	chr3:143148600-143149400	Enhancers	NH-A	brain
26	chr3:143148600-143149600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:143148600-143149600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr3:143148600-143149600	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr3:143148600-143149600	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr3:143148800-143149400	Enhancers	Fetal Lung	lung
31	chr3:143148800-143149400	Enhancers	Gastric	stomach
32	chr3:143148800-143149600	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr3:143148800-143149600	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr3:143148800-143149600	Enhancers	Spleen	Spleen
35	chr3:143148800-143150000	Enhancers	H9 Cell Line	embryonic stem cell
36	chr3:143148800-143150400	Weak transcription	HSMM	muscle
37	chr3:143148800-143150800	Enhancers	Hela-S3	cervix
38	chr3:143149000-143149200	Enhancers	Adipose Nuclei	Adipose
39	chr3:143149000-143149200	Enhancers	NHLF	lung
40	chr3:143149000-143149400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr3:143149000-143149400	Weak transcription	Primary B cells from cord blood	blood
42	chr3:143149000-143149400	Enhancers	Lung	lung
43	chr3:143149000-143149400	Enhancers	Right Atrium	heart
44	chr3:143149000-143149800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr3:143149000-143150000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr3:143149000-143150200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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