Variant report

Variant	rs924824
Chromosome Location	chr1:185520465-185520466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10798019	0.81[EUR][1000 genomes]
rs10911753	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4142138	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7515674	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv947556	chr1:185515946-185523530	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185519400-185520600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr1:185519400-185520600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:185519800-185521000	Enhancers	Placenta	Placenta
4	chr1:185520200-185520600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:185520200-185520600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr1:185520200-185520800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:185520200-185520800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr1:185520200-185520800	Enhancers	Adipose Nuclei	Adipose
9	chr1:185520200-185520800	Enhancers	Gastric	stomach
10	chr1:185520200-185521000	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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