Variant report

Variant	rs925768
Chromosome Location	chr3:161393384-161393385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7632575	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1004255	chr3:161340249-161476537	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161390200-161393400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:161390200-161393600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:161390200-161394000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:161390400-161394200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:161390600-161393800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:161392600-161398200	Weak transcription	Dnd41	blood
7	chr3:161393000-161393400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr3:161393000-161394000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr3:161393200-161393400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr3:161393200-161393400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:161393200-161393800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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