Variant report

Variant	rs9260232
Chromosome Location	chr6:29914909-29914910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:63)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:63 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:29913945-29915585	U87	brain:	n/a	n/a
2	POLR2A	chr6:29913687-29915589	U87	brain:	n/a	n/a
3	POLR2A	chr6:29909149-29917297	GM12878	blood:	n/a	n/a
4	POLR2A	chr6:29909752-29918301	GM12891	blood:	n/a	n/a
5	POU2F2	chr6:29914111-29915663	GM12891	blood:	n/a	n/a
6	POLR2A	chr6:29910963-29917305	GM12891	blood:	n/a	n/a
7	POU2F2	chr6:29914102-29915529	GM12891	blood:	n/a	n/a
8	POLR2A	chr6:29909240-29918378	GM12878	blood:	n/a	n/a
9	RUNX3	chr6:29914452-29914916	GM12878	blood:	n/a	n/a
10	POLR2A	chr6:29912742-29915598	HepG2	liver:	n/a	n/a
11	POLR2A	chr6:29914125-29915635	Hela-S3	cervix:	n/a	n/a
12	POLR2A	chr6:29909189-29917008	GM12892	blood:	n/a	n/a
13	POLR2A	chr6:29914129-29915645	GM12878	blood:	n/a	n/a
14	POLR2A	chr6:29912418-29916693	IMR90	lung:	n/a	n/a
15	POLR2A	chr6:29912233-29915440	Hela-S3	cervix:	n/a	n/a
16	BCLAF1	chr6:29914592-29915546	GM12878	blood:	n/a	n/a
17	POLR2A	chr6:29908721-29917341	GM12892	blood:	n/a	n/a
18	POLR2A	chr6:29914853-29915428	HepG2	liver:	n/a	n/a
19	POLR2A	chr6:29908899-29918950	GM12891	blood:	n/a	n/a
20	ATF2	chr6:29914800-29915500	GM12878	blood:	n/a	n/a
21	POLR2A	chr6:29913991-29915351	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr6:29913962-29915575	H1-hESC	embryonic stem cell:	n/a	n/a
23	PML	chr6:29913677-29917213	GM12878	blood:	n/a	n/a
24	POLR2A	chr6:29909572-29917064	GM12892	blood:	n/a	n/a
25	POU2F2	chr6:29914100-29915527	GM12878	blood:	n/a	n/a
26	NFATC1	chr6:29913967-29917024	GM12878	blood:	n/a	n/a
27	POLR2A	chr6:29914721-29917335	MCF10A-Er-Src	breast:	n/a	n/a
28	POLR2A	chr6:29912077-29917246	GM18526	blood:	n/a	n/a
29	POLR2A	chr6:29912193-29915806	GM15510	blood:	n/a	n/a
30	POLR2A	chr6:29913693-29915369	A549	lung:	n/a	n/a
31	NFATC1	chr6:29914067-29917278	GM12878	blood:	n/a	n/a
32	POLR2A	chr6:29912180-29917233	GM19099	blood:	n/a	n/a
33	POLR2A	chr6:29914422-29915517	PANC-1	pancreas:	n/a	n/a
34	POLR2A	chr6:29913873-29915628	GM10847	blood:	n/a	n/a
35	POLR2A	chr6:29913660-29915535	SK-N-MC	brain:	n/a	n/a
36	STAT5A	chr6:29914826-29915536	GM12878	blood:	n/a	n/a
37	POLR2A	chr6:29912175-29917208	GM12878	blood:	n/a	n/a
38	POLR2A	chr6:29914697-29915564	U87	brain:	n/a	n/a
39	POLR2A	chr6:29912964-29916264	HepG2	liver:	n/a	n/a
40	MTA3	chr6:29914361-29915519	GM12878	blood:	n/a	n/a
41	POLR2A	chr6:29914189-29915205	Hela-S3	cervix:	n/a	n/a
42	POLR2A	chr6:29911002-29917293	GM12891	blood:	n/a	n/a
43	POLR2A	chr6:29909856-29919312	GM12878	blood:	n/a	n/a
44	POLR2A	chr6:29908849-29918356	GM12878	blood:	n/a	n/a
45	BCL3	chr6:29914873-29915463	GM12878	blood:	n/a	n/a
46	POLR2A	chr6:29908781-29917356	GM12892	blood:	n/a	n/a
47	POLR2A	chr6:29914212-29916948	GM12878	blood:	n/a	n/a
48	POLR2A	chr6:29914896-29915318	HCT-116	colon:	n/a	n/a
49	BCLAF1	chr6:29914573-29915557	GM12878	blood:	n/a	n/a
50	POLR2A	chr6:29912109-29917173	GM18505	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29909870..29912784-chr6:29914733..29916600,2	MCF-7	breast:

No data

Variant related genes	Relation type
HCG4P5	TF binding region
ENSG00000227766	Chromatin interaction
ENSG00000206503	Chromatin interaction

Extended variants
information (count: 116 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1061156	0.91[ASN][1000 genomes]
rs1137631	0.85[ASN][1000 genomes]
rs2248153	0.94[ASN][1000 genomes]
rs2523953	0.92[ASN][1000 genomes]
rs2735101	0.86[ASN][1000 genomes]
rs2905763	0.86[ASN][1000 genomes]
rs2975056	0.83[ASN][1000 genomes]
rs3823343	0.86[ASN][1000 genomes]
rs3916365	0.89[ASN][1000 genomes]
rs9260231	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9260233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9260304	0.88[EUR][1000 genomes]
rs9260364	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9260370	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:102 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	esv3441842	chr6:29715749-29942950	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv3332677	chr6:29733187-29961463	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	esv3475027	chr6:29733297-29922699	Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	esv3475028	chr6:29733297-29922699	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	esv3430372	chr6:29759523-29974277	Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
8	esv3426050	chr6:29761594-29918407	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	esv3431350	chr6:29765473-29922767	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
10	esv3451016	chr6:29774115-29929436	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	esv17468	chr6:29782014-29923275	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
12	esv3411103	chr6:29783090-29930409	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
13	esv2758040	chr6:29792434-29975144	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
14	esv2759412	chr6:29792434-29975144	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
15	esv3391180	chr6:29798321-29977430	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
16	esv1849827	chr6:29812776-29918720	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
17	nsv820564	chr6:29814830-29923275	Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
18	nsv823469	chr6:29814830-29923275	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
19	esv1845786	chr6:29817123-29955129	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
20	esv1848127	chr6:29817323-29966451	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
21	esv1810879	chr6:29824229-29917771	Transcr. at gene 5' and 3' Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
22	esv1848221	chr6:29824229-29918837	Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
23	nsv508398	chr6:29825777-30003403	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
24	esv3369212	chr6:29827361-29960177	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
25	esv1824193	chr6:29831309-29925490	Strong transcription Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
26	esv32544	chr6:29831716-29944103	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
27	esv1811402	chr6:29832066-29915156	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
28	esv1824141	chr6:29832266-29924807	Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
29	esv2757159	chr6:29834472-29965501	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
30	esv3376588	chr6:29834667-29964324	Genic enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
31	esv2756061	chr6:29836463-29915993	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
32	esv2752113	chr6:29836463-29916253	Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
33	esv2753490	chr6:29836463-29916253	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
34	esv2763941	chr6:29836636-29921127	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
35	esv2761013	chr6:29837072-29937311	Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
36	esv2754887	chr6:29837142-29916253	Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
37	esv2755291	chr6:29837142-29916505	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
38	esv1806000	chr6:29837192-29921127	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
39	esv1809224	chr6:29837192-29921127	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
40	esv1822838	chr6:29837192-29921127	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
41	esv1823287	chr6:29837192-29921127	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
42	nsv442976	chr6:29837192-29921127	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
43	nsv10810	chr6:29837465-29961415	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
44	nsv5240	chr6:29838459-29928558	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
45	nsv883559	chr6:29840648-29923128	Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
46	esv1819755	chr6:29842626-29915156	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
47	nsv870444	chr6:29842885-29949545	Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
48	nsv1029669	chr6:29844022-29917703	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
49	esv10073	chr6:29849376-29923147	Active TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
50	esv34603	chr6:29849619-29915993	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9260232	C6orf12	Cis_1M	lymphoblastoid	RTeQTL
rs9260232	HLA-A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29910600-29915400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
2	chr6:29911000-29915800	Weak transcription	Aorta	Aorta
3	chr6:29911200-29920200	Weak transcription	A549	lung
4	chr6:29911200-29921400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:29911400-29915000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:29911600-29915000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:29911600-29915200	Weak transcription	HUVEC	blood vessel
8	chr6:29911600-29916200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:29911600-29920400	Weak transcription	Fetal Brain Male	brain
10	chr6:29911800-29916200	Genic enhancers	Left Ventricle	heart
11	chr6:29911800-29916800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:29911800-29917200	Strong transcription	Fetal Stomach	stomach
13	chr6:29911800-29917600	Strong transcription	Fetal Intestine Large	intestine
14	chr6:29912200-29916800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:29912400-29917200	Genic enhancers	Spleen	Spleen
16	chr6:29912400-29918000	Strong transcription	Fetal Intestine Small	intestine
17	chr6:29912600-29915800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:29912600-29916200	Weak transcription	Pancreas	Pancrea
19	chr6:29912600-29921000	Weak transcription	Psoas Muscle	Psoas
20	chr6:29912800-29915000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:29912800-29915200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:29912800-29916800	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:29912800-29924200	Weak transcription	Right Atrium	heart
24	chr6:29913000-29917200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:29913000-29924000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:29913000-29924200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:29913200-29915000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:29913200-29917000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:29913200-29917000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:29913400-29915000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:29913400-29915200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
32	chr6:29913400-29915200	Weak transcription	Gastric	stomach
33	chr6:29913400-29915400	Strong transcription	Fetal Thymus	thymus
34	chr6:29913400-29915600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:29913400-29915800	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr6:29913400-29916800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:29913400-29916800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:29913400-29916800	Strong transcription	HepG2	liver
39	chr6:29913400-29917000	Strong transcription	Stomach Smooth Muscle	stomach
40	chr6:29913400-29917800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:29913400-29917800	Weak transcription	Hela-S3	cervix
42	chr6:29913400-29918800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:29913400-29919600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr6:29913400-29920800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:29913400-29932200	Weak transcription	Brain Anterior Caudate	brain
46	chr6:29913400-29932600	Weak transcription	Brain Substantia Nigra	brain
47	chr6:29913600-29915000	Weak transcription	Ovary	ovary
48	chr6:29913600-29915200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr6:29913600-29915200	Weak transcription	NHDF-Ad	bronchial
50	chr6:29913600-29915400	Weak transcription	H9 Cell Line	embryonic stem cell

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