Variant report

Variant	rs926065
Chromosome Location	chr1:86941488-86941489
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12728761	0.85[ASN][1000 genomes]
rs1407142	1.00[ASN][1000 genomes]
rs34976256	0.85[ASN][1000 genomes]
rs3753276	0.88[CHB][hapmap];0.84[ASN][1000 genomes]
rs4001077	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs4656112	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs4656113	0.85[ASN][1000 genomes]
rs5744306	0.85[ASN][1000 genomes]
rs5744321	0.85[ASN][1000 genomes]
rs5744349	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs926065	CLCA4	cis	cerebellum	SCAN
rs926065	ZNF326	cis	parietal	SCAN
rs926065	LMO4	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86933000-86942800	Weak transcription	K562	blood
2	chr1:86935400-86942800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr1:86938200-86943000	Weak transcription	Fetal Lung	lung
4	chr1:86941200-86942400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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