Variant report

Variant	rs9261418
Chromosome Location	chr6:30076660-30076661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:30076659-30076709	NB4	blood:	n/a
2	chr6:30076659-30076709	NT2-D1	testis:	n/a
3	chr6:30076659-30076709	HepG2	liver:	n/a
4	chr6:30076659-30076709	HCT-116	colon:	n/a
5	chr6:30076659-30076709	GM12892	blood:	n/a
6	chr6:30076659-30076709	SK-N-SH	brain:	n/a
7	chr6:30076659-30076709	Hepatocyte	liver:	n/a
8	chr6:30076659-30076709	SAEC	small airway:	n/a
9	chr6:30076659-30076709	SK-N-SH_RA	brain:	n/a
10	chr6:30076659-30076709	RPTEC	kidney:	n/a
11	chr6:30076659-30076709	AG09319	gingival:	n/a
12	chr6:30076659-30076709	HL-60	blood:	n/a
13	chr6:30076659-30076709	HRPEpiC	eye:	n/a
14	chr6:30076659-30076709	A549	lung:	n/a
15	chr6:30076659-30076709	H1-hESC	embryonic stem cell:	embryo
16	chr6:30076659-30076709	BE2_C	brain:	n/a
17	chr6:30076659-30076709	MCF-7	breast:	n/a
18	chr6:30076659-30076709	HEK293	kidney:	embryo
19	chr6:30076659-30076709	ECC-1	luminal epithelium:	n/a
20	chr6:30076659-30076709	PANC-1	pancreas:	n/a
21	chr6:30076659-30076709	HNPCEpiC	eye:	n/a
22	chr6:30076659-30076709	AG10803	skin:	n/a
23	chr6:30076659-30076709	CMK	blood:	n/a
24	chr6:30076659-30076709	ProgFib	skin:	n/a
25	chr6:30076659-30076709	BJ	skin:	n/a
26	chr6:30076659-30076709	U87	brain:	n/a
27	chr6:30076659-30076709	Caco-2	colon:	n/a
28	chr6:30076659-30076709	HEEpiC	esophagus:	n/a
29	chr6:30076659-30076709	HUVEC	blood vessel:	n/a
30	chr6:30076659-30076709	AG04450	lung:	fetal
31	chr6:30076659-30076709	HAEpiC	amniotic membrane:	n/a
32	chr6:30076659-30076709	PrEC	prostate:	n/a
33	chr6:30076659-30076709	HIPEpiC	eye:	n/a
34	chr6:30076659-30076709	K562	blood:	n/a
35	chr6:30076659-30076709	HCF	heart:	n/a
36	chr6:30076659-30076709	PFSK-1	brain:	n/a
37	chr6:30076659-30076709	Hela-S3	cervix:	n/a
38	chr6:30076659-30076709	AG04449	skin:	fetal
39	chr6:30076659-30076709	IMR90	lung:	fetal
40	chr6:30076659-30076709	HPAEpiC	pulmonary alveolar:	n/a
41	chr6:30076659-30076709	HRCEpiC	kidney:	n/a
42	chr6:30076659-30076709	GM12891	blood:	n/a
43	chr6:30076659-30076709	T-47D	breast:	n/a
44	chr6:30076659-30076709	HCM	heart:	n/a
45	chr6:30076659-30076709	AoSMC	blood vessel:	n/a
46	chr6:30076659-30076709	NH-A	brain:	n/a
47	chr6:30076659-30076709	HCPEpiC	choroid plexus:	n/a
48	chr6:30076659-30076709	NHDF-neo	bronchial:	n/a
49	chr6:30076659-30076709	ovcar-3	ovarian:	n/a
50	chr6:30076659-30076709	GM19239	blood:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30071292..30074099-chr6:30075439..30077084,2	K562	blood:
2	chr6:30028230..30030474-chr6:30075345..30077234,2	MCF-7	breast:
3	chr6:30073473..30076763-chr6:30077230..30080756,3	K562	blood:

No data

Variant related genes	Relation type
TRIM31	CpG island
ENSG00000204623	Chromatin interaction
ENSG00000231226	Chromatin interaction
ENSG00000066379	Chromatin interaction
ENSG00000204616	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1060916	0.80[EUR][1000 genomes]
rs2072107	0.81[EUR][1000 genomes]
rs9261408	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9261567	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432866	chr6:30026321-30080921	Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30071600-30079200	Weak transcription	Gastric	stomach
2	chr6:30072200-30078000	Weak transcription	Colonic Mucosa	Colon
3	chr6:30075800-30078000	Weak transcription	Fetal Intestine Small	intestine
4	chr6:30076000-30079400	Weak transcription	Hela-S3	cervix
5	chr6:30076600-30076800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:30076600-30077000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
7	chr6:30076600-30077000	Flanking Active TSS	Stomach Mucosa	stomach
8	chr6:30076600-30077200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum

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