Variant report

Variant	rs9261739
Chromosome Location	chr6:30367535-30367536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30365835..30367993-chr6:30369387..30370931,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1548512	0.87[AFR][1000 genomes]
rs1548513	0.87[AFR][1000 genomes]
rs1548514	0.86[AFR][1000 genomes]
rs1548515	0.86[AFR][1000 genomes]
rs1573293	0.87[AFR][1000 genomes]
rs1573294	0.87[AFR][1000 genomes]
rs2023371	0.90[AFR][1000 genomes]
rs3130118	0.90[ASN][1000 genomes]
rs3131113	0.98[ASN][1000 genomes]
rs35792611	0.81[AFR][1000 genomes]
rs9261745	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9261746	0.93[AFR][1000 genomes]
rs9261748	0.93[AFR][1000 genomes]
rs9261755	0.82[AFR][1000 genomes]
rs9261757	0.93[AFR][1000 genomes]
rs9261758	0.93[AFR][1000 genomes]
rs9261759	0.93[AFR][1000 genomes]
rs9261760	0.93[AFR][1000 genomes]
rs9261761	0.93[AFR][1000 genomes]
rs9261762	0.92[AFR][1000 genomes]
rs9261764	0.92[AFR][1000 genomes]
rs9261765	0.92[AFR][1000 genomes]
rs9261766	0.90[AFR][1000 genomes]
rs9261767	0.92[AFR][1000 genomes]
rs9261768	0.92[AFR][1000 genomes]
rs9261769	0.92[AFR][1000 genomes]
rs9261770	0.92[AFR][1000 genomes]
rs9261771	0.92[AFR][1000 genomes]
rs9261772	0.92[AFR][1000 genomes]
rs9261773	0.92[AFR][1000 genomes]
rs9261776	0.92[AFR][1000 genomes]
rs9261777	0.92[AFR][1000 genomes]
rs9261778	0.92[AFR][1000 genomes]
rs9261779	0.92[AFR][1000 genomes]
rs9261780	0.92[AFR][1000 genomes]
rs9261781	0.92[AFR][1000 genomes]
rs9261783	0.92[AFR][1000 genomes]
rs9261784	0.92[AFR][1000 genomes]
rs9261817	0.92[AFR][1000 genomes]
rs9261820	0.85[AFR][1000 genomes]
rs9261821	0.90[AFR][1000 genomes]
rs9261823	0.85[AFR][1000 genomes]
rs9261825	0.92[AFR][1000 genomes]
rs9261826	0.92[AFR][1000 genomes]
rs9261827	0.92[AFR][1000 genomes]
rs9261828	0.92[AFR][1000 genomes]
rs9261833	0.92[AFR][1000 genomes]
rs9261834	0.92[AFR][1000 genomes]
rs9261843	0.96[AFR][1000 genomes]
rs9261846	0.87[AFR][1000 genomes]
rs9261849	0.87[AFR][1000 genomes]
rs9261850	0.87[AFR][1000 genomes]
rs9261853	0.87[AFR][1000 genomes]
rs9261854	0.87[AFR][1000 genomes]
rs9261855	0.87[AFR][1000 genomes]
rs9261856	0.87[AFR][1000 genomes]
rs9261858	0.87[AFR][1000 genomes]
rs9261859	0.87[AFR][1000 genomes]
rs9261860	0.87[AFR][1000 genomes]
rs9261861	0.85[AFR][1000 genomes]
rs9261862	0.87[AFR][1000 genomes]
rs9261863	0.87[AFR][1000 genomes]
rs9261866	0.86[AFR][1000 genomes]
rs9261867	0.86[AFR][1000 genomes]
rs9261869	0.87[AFR][1000 genomes]
rs9261871	0.87[AFR][1000 genomes]
rs9261872	0.87[AFR][1000 genomes]
rs9261873	0.87[AFR][1000 genomes]
rs9261874	0.87[AFR][1000 genomes]
rs9261875	0.85[AFR][1000 genomes]
rs9261876	0.93[AFR][1000 genomes]
rs9261884	0.87[AFR][1000 genomes]
rs9261890	0.87[AFR][1000 genomes]
rs9261891	0.87[AFR][1000 genomes]
rs9261892	0.87[AFR][1000 genomes]
rs9261894	0.87[AFR][1000 genomes]
rs9261895	0.87[AFR][1000 genomes]
rs9468780	0.81[AFR][1000 genomes]
rs9468781	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	nsv969293	chr6:30348821-30368580	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv526251	chr6:30366100-30368012	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv884063	chr6:30366100-30397219	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv518836	chr6:30367182-30368012	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30367200-30367600	Enhancers	NHEK	skin

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