Variant report

Variant	rs9261819
Chromosome Location	chr6:30378989-30378990
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:30378900-30379050	HA-sp	spinal cord:	n/a	n/a
2	CTCF	chr6:30378900-30379050	GM12873	blood:	n/a	n/a
3	CTCF	chr6:30378920-30379070	AoAF	blood vessel:	n/a	n/a
4	CTCF	chr6:30378960-30379110	SK-N-SH_RA	brain:	n/a	n/a
5	CTCF	chr6:30378980-30379130	HEK293	kidney:	n/a	n/a
6	CTCF	chr6:30378860-30379010	HMEC	breast:	n/a	n/a
7	CTCF	chr6:30378940-30379090	AG04449	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30378981..30379484-chr6:30421470..30421976,2	K562	blood:

Variant related genes	Relation type
MICC	TF binding region

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1548512	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1548513	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1548514	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1548515	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1573293	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1573294	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17188876	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2023371	0.86[EUR][1000 genomes]
rs2023372	0.84[EUR][1000 genomes]
rs41265603	0.81[AMR][1000 genomes]
rs9261737	0.89[EUR][1000 genomes]
rs9261746	0.86[EUR][1000 genomes]
rs9261748	0.86[EUR][1000 genomes]
rs9261755	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9261757	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9261758	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261759	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9261760	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261761	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9261762	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9261764	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261765	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261766	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261767	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261768	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261769	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261770	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261771	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261772	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261773	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261776	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261777	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9261778	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261779	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261780	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261781	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261783	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261784	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261817	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9261820	0.86[EUR][1000 genomes]
rs9261821	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9261823	0.81[EUR][1000 genomes]
rs9261825	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9261826	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9261827	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9261828	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261833	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9261834	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261846	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261849	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261850	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261853	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261854	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261855	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261856	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261857	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261858	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261859	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261860	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261861	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261862	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261863	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261866	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261867	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261869	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261871	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261872	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261873	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261874	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261875	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261884	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261890	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261891	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261892	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261894	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261895	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9918389	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	nsv884063	chr6:30366100-30397219	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv462742	chr6:30372570-30410206	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv601477	chr6:30372570-30410206	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv884064	chr6:30375290-30396173	Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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