Variant report

Variant	rs9262225
Chromosome Location	chr6:30810147-30810148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30710179..30712517-chr6:30808321..30811657,4	MCF-7	breast:
2	chr6:30806333..30810243-chr6:30843203..30846067,3	K562	blood:
3	chr6:30805834..30810192-chr6:30850275..30853725,4	MCF-7	breast:
4	chr6:30807490..30810871-chr6:30840456..30844706,4	MCF-7	breast:
5	chr6:30796462..30798109-chr6:30809712..30812488,2	K562	blood:
6	chr6:30582567..30584748-chr6:30808358..30810776,3	MCF-7	breast:
7	chr6:30809749..30812115-chr6:30849210..30852847,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237775	Chromatin interaction
ENSG00000137331	Chromatin interaction
ENSG00000204580	Chromatin interaction
ENSG00000272273	Chromatin interaction
ENSG00000137312	Chromatin interaction
ENSG00000222894	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs14350	0.83[EUR][1000 genomes]
rs2247178	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2394393	0.83[EUR][1000 genomes]
rs2429557	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2429643	0.83[EUR][1000 genomes]
rs2517562	0.83[EUR][1000 genomes]
rs2844700	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844707	0.83[EUR][1000 genomes]
rs3094107	0.83[EUR][1000 genomes]
rs3129999	0.83[EUR][1000 genomes]
rs3130674	0.83[EUR][1000 genomes]
rs3130675	0.83[EUR][1000 genomes]
rs34377509	0.83[EUR][1000 genomes]
rs9262217	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9262222	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9262223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9262234	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9262239	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9262242	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9262256	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9262257	0.83[EUR][1000 genomes]
rs9262268	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9262270	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9262278	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9262280	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	esv3430377	chr6:30443802-30814426	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	967 gene(s)	inside rSNPs	diseases
5	esv2758041	chr6:30644693-30816319	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	223 gene(s)	inside rSNPs	diseases
6	esv2759413	chr6:30644693-30816319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	223 gene(s)	inside rSNPs	diseases
7	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
8	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
9	nsv526110	chr6:30800577-30810654	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30796800-30811000	Weak transcription	Right Ventricle	heart
2	chr6:30797200-30812000	Weak transcription	Lung	lung
3	chr6:30799200-30812200	Weak transcription	Spleen	Spleen
4	chr6:30803200-30811400	Enhancers	Fetal Thymus	thymus
5	chr6:30803200-30811400	Enhancers	Thymus	Thymus
6	chr6:30803800-30811200	Enhancers	Dnd41	blood
7	chr6:30804600-30811200	Weak transcription	Adipose Nuclei	Adipose
8	chr6:30804600-30811200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:30804600-30811600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:30805000-30811000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:30805600-30811200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:30805800-30811000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:30805800-30811200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:30806600-30811600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:30806800-30811400	Strong transcription	H9 Cell Line	embryonic stem cell
16	chr6:30806800-30816200	Enhancers	Placenta	Placenta
17	chr6:30807000-30810200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:30807000-30811000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:30807400-30810200	Enhancers	Stomach Mucosa	stomach
20	chr6:30807400-30812200	Enhancers	Duodenum Mucosa	Duodenum
21	chr6:30807600-30810200	Enhancers	K562	blood
22	chr6:30807800-30810800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:30807800-30810800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:30807800-30811000	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr6:30807800-30811400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr6:30807800-30811400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:30808000-30810200	Enhancers	Hela-S3	cervix
28	chr6:30808000-30811200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:30808000-30811200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:30808200-30812000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:30808200-30813600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:30808400-30810200	Enhancers	Primary T cells fromperipheralblood	blood
33	chr6:30808600-30810400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:30808600-30811000	Weak transcription	NHEK	skin
35	chr6:30808600-30811200	Weak transcription	Fetal Intestine Small	intestine
36	chr6:30808600-30811600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:30808800-30811000	Weak transcription	Fetal Intestine Large	intestine
38	chr6:30809000-30810200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:30809000-30810800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:30809000-30811000	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr6:30809000-30811200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:30809000-30811200	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr6:30809000-30811800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:30809200-30810200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:30809200-30810200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:30809200-30810200	Enhancers	Right Atrium	heart
47	chr6:30809200-30810400	Enhancers	Osteobl	bone
48	chr6:30809200-30811200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr6:30809400-30810200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr6:30809400-30810400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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