Variant report

Variant	rs9263783
Chromosome Location	chr6:31123569-31123570
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31123569-31123619	HNPCEpiC	eye:	n/a
2	chr6:31123569-31123619	SAEC	small airway:	n/a
3	chr6:31123569-31123619	Hepatocyte	liver:	n/a
4	chr6:31123569-31123619	HCT-116	colon:	n/a
5	chr6:31123569-31123619	LNCaP	prostate:	n/a
6	chr6:31123569-31123619	PANC-1	pancreas:	n/a
7	chr6:31123569-31123619	HEEpiC	esophagus:	n/a
8	chr6:31123569-31123619	IMR90	lung:	fetal
9	chr6:31123569-31123619	HPAEpiC	pulmonary alveolar:	n/a
10	chr6:31123569-31123619	GM12892	blood:	n/a
11	chr6:31123569-31123619	HUVEC	blood vessel:	n/a
12	chr6:31123569-31123619	NT2-D1	testis:	n/a
13	chr6:31123569-31123619	AG10803	skin:	n/a
14	chr6:31123569-31123619	ProgFib	skin:	n/a
15	chr6:31123569-31123619	RPTEC	kidney:	n/a
16	chr6:31123569-31123619	HIPEpiC	eye:	n/a
17	chr6:31123569-31123619	AG04449	skin:	fetal
18	chr6:31123569-31123619	HCPEpiC	choroid plexus:	n/a
19	chr6:31123569-31123619	Jurkat	blood:	n/a
20	chr6:31123569-31123619	A549	lung:	n/a
21	chr6:31123569-31123619	BJ	skin:	n/a
22	chr6:31123569-31123619	MCF-7	breast:	n/a
23	chr6:31123569-31123619	MCF10A-Er-Src	breast:	n/a
24	chr6:31123569-31123619	HRCEpiC	kidney:	n/a
25	chr6:31123569-31123619	SKMC	muscle:	n/a
26	chr6:31123569-31123619	ECC-1	luminal epithelium:	n/a
27	chr6:31123569-31123619	PFSK-1	brain:	n/a
28	chr6:31123569-31123619	HCF	heart:	n/a
29	chr6:31123569-31123619	H1-hESC	embryonic stem cell:	embryo
30	chr6:31123569-31123619	NHDF-neo	bronchial:	n/a
31	chr6:31123569-31123619	SK-N-MC	brain:	n/a
32	chr6:31123569-31123619	HMEC	breast:	n/a
33	chr6:31123569-31123619	HepG2	liver:	n/a
34	chr6:31123569-31123619	AG09309	skin:	n/a
35	chr6:31123569-31123619	GM19239	blood:	n/a
36	chr6:31123569-31123619	AoSMC	blood vessel:	n/a
37	chr6:31123569-31123619	HEK293	kidney:	embryo
38	chr6:31123569-31123619	ovcar-3	ovarian:	n/a
39	chr6:31123569-31123619	PrEC	prostate:	n/a
40	chr6:31123569-31123619	Caco-2	colon:	n/a
41	chr6:31123569-31123619	NB4	blood:	n/a
42	chr6:31123569-31123619	HRPEpiC	eye:	n/a
43	chr6:31123569-31123619	GM06990	blood:	n/a
44	chr6:31123569-31123619	Hela-S3	cervix:	n/a
45	chr6:31123569-31123619	SK-N-SH_RA	brain:	n/a
46	chr6:31123569-31123619	T-47D	breast:	n/a
47	chr6:31123569-31123619	HRE	kidney:	n/a
48	chr6:31123569-31123619	U87	brain:	n/a
49	chr6:31123569-31123619	HCM	heart:	n/a
50	chr6:31123569-31123619	HL-60	blood:	n/a

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:31116689..31119145-chr6:31122656..31125188,2	K562	blood:
2	chr6:31103871..31105834-chr6:31123155..31127372,3	MCF-7	breast:
3	chr6:31112475..31116177-chr6:31122128..31126125,5	K562	blood:
4	chr6:31120552..31122855-chr6:31123459..31126942,6	MCF-7	breast:

No data

Variant related genes	Relation type
TCF19	CpG island
CCHCR1	CpG island
ENSG00000204540	Chromatin interaction
ENSG00000204536	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1044870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1063646	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11758495	0.86[ASN][1000 genomes]
rs12364	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs130077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17190589	0.83[ASN][1000 genomes]
rs2233945	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2233946	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2233947	0.93[ASN][1000 genomes]
rs28742577	0.86[ASN][1000 genomes]
rs35157432	0.83[ASN][1000 genomes]
rs62398706	0.86[ASN][1000 genomes]
rs62400570	0.80[ASN][1000 genomes]
rs6903261	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6909939	0.86[AFR][1000 genomes]
rs6910473	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6913074	0.93[ASN][1000 genomes]
rs7757012	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7771067	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9263708	0.83[ASN][1000 genomes]
rs9263733	0.93[ASN][1000 genomes]
rs9263738	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9263739	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9263741	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9263745	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9263749	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9263750	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9263751	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9263756	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9263766	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9263768	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9263769	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9263774	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9263775	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9263776	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9263777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9263778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9263781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9263782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9263785	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9263786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9263790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9263792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9263794	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9263796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9263800	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9263802	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9263809	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9263810	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9263811	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9263816	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9263817	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9263818	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9263822	0.86[ASN][1000 genomes]
rs9263825	0.93[ASN][1000 genomes]
rs9263827	0.86[ASN][1000 genomes]
rs9263832	0.86[ASN][1000 genomes]
rs9263833	0.93[ASN][1000 genomes]
rs9263838	0.93[ASN][1000 genomes]
rs9263843	0.86[ASN][1000 genomes]
rs9263855	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
6	nsv1029442	chr6:31006647-31449207	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
7	nsv427750	chr6:31028290-31234581	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
8	nsv428140	chr6:31028290-31462106	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
9	esv2758042	chr6:31028290-31497106	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
10	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
11	nsv525933	chr6:31081205-31142245	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
12	nsv884137	chr6:31082361-31129310	Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
13	nsv1019637	chr6:31104401-31354706	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
14	nsv1029569	chr6:31104401-31412740	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
15	nsv538174	chr6:31104401-31412740	Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
16	nsv524061	chr6:31107087-31133943	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	nsv884138	chr6:31114573-31129707	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31105600-31124400	Weak transcription	Fetal Kidney	kidney
2	chr6:31105600-31124800	Weak transcription	Small Intestine	intestine
3	chr6:31105800-31124400	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:31105800-31124800	Weak transcription	Hela-S3	cervix
5	chr6:31105800-31125200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:31106000-31125000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:31106000-31125000	Weak transcription	Fetal Brain Male	brain
8	chr6:31106000-31125200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:31107600-31125000	Weak transcription	NHDF-Ad	bronchial
10	chr6:31107800-31125000	Weak transcription	Fetal Heart	heart
11	chr6:31110000-31124600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:31110200-31125000	Weak transcription	A549	lung
13	chr6:31111000-31124400	Weak transcription	Psoas Muscle	Psoas
14	chr6:31111000-31125000	Weak transcription	NHEK	skin
15	chr6:31111000-31125200	Weak transcription	HSMMtube	muscle
16	chr6:31111200-31125000	Weak transcription	HUVEC	blood vessel
17	chr6:31111400-31124400	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:31111400-31124800	Weak transcription	Aorta	Aorta
19	chr6:31111400-31124800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr6:31111400-31124800	Strong transcription	Fetal Stomach	stomach
21	chr6:31111400-31125000	Weak transcription	Right Atrium	heart
22	chr6:31111400-31125000	Weak transcription	HMEC	breast
23	chr6:31111400-31125600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr6:31111600-31124600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:31111600-31125000	Weak transcription	NH-A	brain
26	chr6:31111800-31124200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:31112400-31125000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:31113600-31123600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:31113800-31125200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr6:31116000-31124400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:31116200-31125200	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr6:31116400-31124600	Weak transcription	GM12878-XiMat	blood
33	chr6:31118000-31125000	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr6:31118400-31124600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:31118600-31125000	Weak transcription	Brain Substantia Nigra	brain
36	chr6:31118600-31125000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr6:31118600-31125000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr6:31118800-31124800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr6:31119000-31124400	Weak transcription	Brain Germinal Matrix	brain
40	chr6:31119000-31125000	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr6:31119000-31125200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:31119400-31124400	Weak transcription	Pancreas	Pancrea
43	chr6:31119400-31125200	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr6:31119600-31125000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:31119600-31125000	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:31119600-31125000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:31119600-31125000	Weak transcription	Colonic Mucosa	Colon
48	chr6:31119600-31125200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr6:31120600-31124000	Strong transcription	Dnd41	blood
50	chr6:31120800-31124600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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