Variant report

Variant	rs926623
Chromosome Location	chr11:34364133-34364134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34359062..34360575-chr11:34363505..34365400,2	K562	blood:
2	chr11:34363297..34366211-chr11:34370921..34372477,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6484706	0.82[JPT][hapmap]
rs7944118	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv897210	chr11:34349427-34381075	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs926623	TFF2	trans	parietal	SCAN

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34353200-34365400	Weak transcription	Pancreas	Pancrea
2	chr11:34354400-34366600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:34359400-34364400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:34360200-34368400	Enhancers	Liver	Liver
5	chr11:34361200-34364400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr11:34361200-34366400	Weak transcription	Esophagus	oesophagus
7	chr11:34361400-34364800	Enhancers	Psoas Muscle	Psoas
8	chr11:34361400-34366200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:34361400-34366200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:34361400-34366600	Enhancers	HepG2	liver
11	chr11:34361600-34364400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr11:34361600-34366000	Weak transcription	Fetal Brain Female	brain
13	chr11:34361600-34366000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:34361600-34366400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:34361800-34364200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr11:34361800-34370800	Weak transcription	GM12878-XiMat	blood
17	chr11:34362000-34365000	Weak transcription	Brain Germinal Matrix	brain
18	chr11:34362000-34366000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:34362000-34366000	Enhancers	A549	lung
20	chr11:34362000-34366200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr11:34362000-34366200	Weak transcription	Fetal Brain Male	brain
22	chr11:34362000-34366400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr11:34362000-34366400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:34362200-34364400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr11:34362400-34364200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr11:34362400-34364200	Enhancers	Fetal Kidney	kidney
27	chr11:34362400-34364400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:34362400-34364400	Enhancers	Ovary	ovary
29	chr11:34362400-34366400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:34362600-34366800	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr11:34362600-34370200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:34362800-34364200	Enhancers	Adipose Nuclei	Adipose
33	chr11:34362800-34364400	Enhancers	Aorta	Aorta
34	chr11:34362800-34364400	Enhancers	Fetal Intestine Small	intestine
35	chr11:34362800-34364800	Enhancers	Right Atrium	heart
36	chr11:34363000-34364800	Enhancers	Right Ventricle	heart
37	chr11:34363000-34365000	Enhancers	Fetal Stomach	stomach
38	chr11:34363000-34365200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:34363000-34365400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:34363000-34366600	Enhancers	HSMMtube	muscle
41	chr11:34363000-34372400	Enhancers	Fetal Muscle Leg	muscle
42	chr11:34363200-34364200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:34363200-34364400	Enhancers	Duodenum Mucosa	Duodenum
44	chr11:34363200-34364400	Enhancers	Rectal Smooth Muscle	rectum
45	chr11:34363200-34364400	Enhancers	Stomach Mucosa	stomach
46	chr11:34363200-34364400	Flanking Active TSS	Stomach Smooth Muscle	stomach
47	chr11:34363200-34367200	Enhancers	Fetal Heart	heart
48	chr11:34363400-34364200	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr11:34363400-34364400	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr11:34363400-34364400	Enhancers	Rectal Mucosa Donor 31	rectum

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