Variant report

Variant	rs9266239
Chromosome Location	chr6:31325529-31325530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:26)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:26 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr6:31322211-31327077	IMR90	lung:	n/a	n/a
2	RFX5	chr6:31324743-31325568	GM12878	blood:	n/a	n/a
3	POLR2A	chr6:31317673-31326364	GM12891	blood:	n/a	n/a
4	MXI1	chr6:31323943-31325675	IMR90	lung:	n/a	n/a
5	BCLAF1	chr6:31324267-31325663	GM12878	blood:	n/a	n/a
6	POLR2A	chr6:31324271-31325961	GM12891	blood:	n/a	n/a
7	POLR2A	chr6:31317939-31326462	GM12892	blood:	n/a	n/a
8	PML	chr6:31324138-31325557	GM12878	blood:	n/a	n/a
9	POLR2A	chr6:31317763-31326416	GM12878	blood:	n/a	n/a
10	POLR2A	chr6:31317961-31326519	GM12892	blood:	n/a	n/a
11	POLR2A	chr6:31317721-31326503	GM12878	blood:	n/a	n/a
12	POLR2A	chr6:31318010-31326009	GM12891	blood:	n/a	n/a
13	POLR2A	chr6:31324361-31326297	GM12891	blood:	n/a	n/a
14	SPI1	chr6:31324565-31325720	GM12878	blood:	n/a	n/a
15	POU2F2	chr6:31324259-31325553	GM12891	blood:	n/a	n/a
16	RFX5	chr6:31324312-31325896	H1-hESC	embryonic stem cell:	n/a	n/a
17	FOXM1	chr6:31324147-31325642	GM12878	blood:	n/a	n/a
18	POLR2A	chr6:31317900-31326472	GM12892	blood:	n/a	n/a
19	NFIC	chr6:31324645-31325613	GM12878	blood:	n/a	n/a
20	RFX5	chr6:31324284-31326494	SK-N-SH	brain:	n/a	n/a
21	RFX5	chr6:31324443-31325569	HepG2	liver:	n/a	n/a
22	POLR2A	chr6:31317985-31326394	GM12892	blood:	n/a	n/a
23	POLR2A	chr6:31317410-31325850	GM12891	blood:	n/a	n/a
24	MTA3	chr6:31324995-31325625	GM12878	blood:	n/a	n/a
25	MTA3	chr6:31317858-31326579	GM12878	blood:	n/a	n/a
26	CEBPB	chr6:31324938-31325551	GM12878	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:29689852..29692667-chr6:31324164..31326641,2	K562	blood:
2	chr6:31239600..31240303-chr6:31325089..31325595,2	Hela-S3	cervix:
3	chr6:31241176..31243692-chr6:31324996..31327759,3	MCF-7	breast:

No data

Variant related genes	Relation type
HLA-B	TF binding region
ENSG00000204525	Chromatin interaction
ENSG00000204642	Chromatin interaction
ENSG00000225864	Chromatin interaction
ENSG00000214892	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 29 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2395476	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2523587	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67366970	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9266206	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9266214	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9266217	0.87[ASN][1000 genomes]
rs9266231	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9266232	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9266235	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9266241	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9266242	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9266243	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9266250	0.83[AFR][1000 genomes]
rs9266257	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:112 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
4	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv1029442	chr6:31006647-31449207	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
6	nsv428140	chr6:31028290-31462106	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
7	esv2758042	chr6:31028290-31497106	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
8	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
9	nsv1019637	chr6:31104401-31354706	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
10	nsv1029569	chr6:31104401-31412740	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
11	nsv538174	chr6:31104401-31412740	Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
12	nsv1025909	chr6:31131121-31354706	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
13	nsv538175	chr6:31131121-31354706	Active TSS Bivalent Enhancer Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
14	nsv1015890	chr6:31131121-31449207	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
15	nsv538176	chr6:31131121-31449207	Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
16	nsv1024887	chr6:31162849-31354706	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
17	nsv538177	chr6:31162849-31354706	Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
18	nsv1015903	chr6:31162849-31412740	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
19	nsv538178	chr6:31162849-31412740	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
20	nsv1031682	chr6:31162849-31449207	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
21	nsv538179	chr6:31162849-31449207	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
22	esv3381377	chr6:31192213-31498578	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
23	esv3340592	chr6:31192248-31498535	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
24	nsv432867	chr6:31196671-31343862	Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
25	nsv538180	chr6:31206639-31386279	Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
26	nsv1029142	chr6:31206639-31449207	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
27	nsv1021052	chr6:31206639-31485736	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
28	esv3328153	chr6:31230846-31327330	Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
29	esv3475034	chr6:31234427-31327274	Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
30	esv3475035	chr6:31234427-31327274	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
31	nsv601503	chr6:31237229-31336891	Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
32	nsv601507	chr6:31237586-31339844	Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
33	esv7127	chr6:31240823-31326158	Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
34	esv3512386	chr6:31241246-31326307	Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
35	esv3512387	chr6:31241246-31326307	Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
36	esv2752834	chr6:31242621-31343821	Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
37	esv3447150	chr6:31242780-31326059	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
38	esv3374087	chr6:31250655-31330669	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
39	esv2757161	chr6:31251360-31335707	Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
40	nsv1029526	chr6:31256354-31449207	Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
41	nsv538181	chr6:31256354-31449207	Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
42	esv1804322	chr6:31269577-31326162	Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
43	nsv1029508	chr6:31269776-31445712	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
44	nsv538182	chr6:31269776-31445712	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
45	esv1830805	chr6:31269777-31450100	Flanking Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
46	esv33563	chr6:31275505-31453668	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
47	nsv601570	chr6:31276751-31451476	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
48	nsv1018705	chr6:31277798-31337397	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
49	nsv538183	chr6:31277798-31337397	Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
50	nsv538184	chr6:31277798-31445712	Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:29)

SNP	Gene	Cis/trans	Tissue	Source
rs9266239	HLA-B	cis	Muscle Skeletal	GTEx
rs9266239	HLA-B	cis	Artery Tibial	GTEx
rs9266239	HLA-C	cis	Thyroid	GTEx
rs9266239	HLA-B	cis	lung	GTEx
rs9266239	XXbac-BPG248L24.12	cis	lung	GTEx
rs9266239	HLA-C	cis	Artery Tibial	GTEx
rs9266239	HLA-B	cis	Whole Blood	GTEx
rs9266239	HLA-C	cis	Muscle Skeletal	GTEx
rs9266239	HLA-C	cis	Esophagus Mucosa	GTEx
rs9266239	XXbac-BPG248L24.12	cis	Esophagus Muscularis	GTEx
rs9266239	HCG27	cis	Thyroid	GTEx
rs9266239	XXbac-BPG248L24.12	cis	Nerve Tibial	GTEx
rs9266239	HLA-C	cis	Whole Blood	GTEx
rs9266239	XXbac-BPG248L24.12	cis	Whole Blood	GTEx
rs9266239	XXbac-BPG248L24.12	cis	Stomach	GTEx
rs9266239	HLA-C	cis	Nerve Tibial	GTEx
rs9266239	HLA-C	cis	Skin Sun Exposed Lower leg	GTEx
rs9266239	XXbac-BPG248L24.12	cis	Skin Sun Exposed Lower leg	GTEx
rs9266239	HLA-C	cis	Esophagus Muscularis	GTEx
rs9266239	XXbac-BPG248L24.12	cis	Artery Aorta	GTEx
rs9266239	XXbac-BPG248L24.12	cis	Muscle Skeletal	GTEx
rs9266239	HLA-B	cis	Skin Sun Exposed Lower leg	GTEx
rs9266239	XXbac-BPG248L24.12	cis	Adipose Subcutaneous	GTEx
rs9266239	HLA-C	cis	Adipose Subcutaneous	GTEx
rs9266239	XXbac-BPG248L24.12	cis	Esophagus Mucosa	GTEx
rs9266239	XXbac-BPG248L24.12	cis	Thyroid	GTEx
rs9266239	XXbac-BPG248L24.12	cis	Artery Tibial	GTEx
rs9266239	XXbac-BPG248L24.12	cis	Heart Left Ventricle	GTEx
rs9266239	HLA-C	cis	lung	GTEx

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31323000-31326000	Active TSS	Right Atrium	heart
2	chr6:31323200-31325600	Active TSS	Left Ventricle	heart
3	chr6:31323200-31325800	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr6:31323200-31326000	Active TSS	Brain Cingulate Gyrus	brain
5	chr6:31323400-31325600	Active TSS	Right Ventricle	heart
6	chr6:31323400-31325600	Active TSS	Small Intestine	intestine
7	chr6:31323600-31325600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
8	chr6:31323600-31325600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr6:31323600-31325600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr6:31323600-31325600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:31323600-31325600	Active TSS	Psoas Muscle	Psoas
12	chr6:31323600-31325800	Active TSS	Brain Anterior Caudate	brain
13	chr6:31323800-31325600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
14	chr6:31323800-31325600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:31323800-31325600	Active TSS	Colon Smooth Muscle	Colon
16	chr6:31323800-31325800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:31323800-31325800	Active TSS	NHDF-Ad	bronchial
18	chr6:31323800-31326000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:31323800-31326000	Active TSS	Rectal Smooth Muscle	rectum
20	chr6:31323800-31326600	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr6:31324000-31325600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:31324000-31325600	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:31324000-31325600	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr6:31324000-31325600	Active TSS	Primary T cells from cord blood	blood
25	chr6:31324000-31325600	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr6:31324000-31325600	Active TSS	Sigmoid Colon	Sigmoid Colon
27	chr6:31324000-31325600	Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr6:31324000-31325600	Active TSS	Stomach Mucosa	stomach
29	chr6:31324000-31325600	Active TSS	GM12878-XiMat	blood
30	chr6:31324000-31325600	Bivalent/Poised TSS	HepG2	liver
31	chr6:31324000-31325600	Active TSS	Monocytes-CD14+_RO01746	blood
32	chr6:31324000-31325800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:31324000-31325800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
34	chr6:31324000-31326000	Active TSS	Primary monocytes fromperipheralblood	blood
35	chr6:31324000-31326000	Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr6:31324000-31326000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:31324000-31326000	Active TSS	Primary T killer memory cells from peripheral blood	blood
38	chr6:31324000-31326000	Active TSS	Colonic Mucosa	Colon
39	chr6:31324000-31326000	Active TSS	NHLF	lung
40	chr6:31324000-31326200	Active TSS	Rectal Mucosa Donor 31	rectum
41	chr6:31324200-31325600	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
42	chr6:31324200-31325800	Active TSS	Primary B cells from peripheral blood	blood
43	chr6:31324200-31325800	Active TSS	Primary T cells fromperipheralblood	blood
44	chr6:31324400-31325600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:31324400-31326000	Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr6:31324600-31325600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:31324600-31325600	Bivalent/Poised TSS	HUVEC	blood vessel
48	chr6:31324600-31325800	Active TSS	Primary T helper cells fromperipheralblood	blood
49	chr6:31324600-31325800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:31324800-31325600	Active TSS	Skeletal Muscle Male	skeletal muscle

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