Variant report

Variant	rs9267508
Chromosome Location	chr6:31564299-31564300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:31557562..31560415-chr6:31563588..31566360,2	K562	blood:
2	chr6:31511774..31515264-chr6:31563314..31566638,3	K562	blood:
3	chr6:31544984..31547805-chr6:31562709..31565695,2	MCF-7	breast:
4	chr6:31508128..31511656-chr6:31563517..31568098,6	K562	blood:
5	chr6:31541833..31544710-chr6:31563226..31565455,2	K562	blood:
6	chr6:31513067..31517986-chr6:31563374..31568109,9	K562	blood:

Variant related genes	Relation type
ENSG00000213760	Chromatin interaction
ENSG00000204498	Chromatin interaction
ENSG00000234006	Chromatin interaction
ENSG00000232810	Chromatin interaction
ENSG00000265236	Chromatin interaction
ENSG00000198563	Chromatin interaction
ENSG00000254870	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9267493	0.92[AMR][1000 genomes]
rs9267517	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
2	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
3	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
4	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
5	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
6	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
7	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
8	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
9	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
10	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
11	nsv432868	chr6:31338844-31721033	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	250 gene(s)	inside rSNPs	diseases
12	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
13	nsv830627	chr6:31496214-31659950	Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
14	nsv884418	chr6:31525448-31741078	Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
15	nsv1033154	chr6:31550614-32009410	Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31550000-31583200	Weak transcription	Right Atrium	heart
2	chr6:31557600-31566200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:31560800-31564600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:31560800-31566000	Weak transcription	Spleen	Spleen
5	chr6:31560800-31568200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:31561000-31564400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:31561000-31564400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:31561000-31566800	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:31561000-31566800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr6:31561000-31568400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:31561200-31564600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:31561200-31565400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:31561200-31565400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr6:31561200-31566000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr6:31561200-31566000	Weak transcription	Dnd41	blood
16	chr6:31561200-31566800	Enhancers	Primary T cells fromperipheralblood	blood
17	chr6:31561200-31566800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:31561600-31566000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:31561600-31566800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr6:31561800-31564400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:31561800-31564400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:31561800-31564600	Weak transcription	Thymus	Thymus
23	chr6:31561800-31566000	Weak transcription	GM12878-XiMat	blood
24	chr6:31563400-31565200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:31563600-31564400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr6:31563600-31565200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr6:31563600-31565400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:31563600-31565400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr6:31563600-31566400	Enhancers	Primary T cells from cord blood	blood
30	chr6:31563600-31566800	Enhancers	Fetal Thymus	thymus
31	chr6:31563800-31566600	Enhancers	Primary B cells from cord blood	blood
32	chr6:31563800-31567000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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