Variant report

Variant	rs9267810
Chromosome Location	chr6:32121594-32121595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:411)
CpG islands
(count:122)
Chromatin interactive
region (count:24)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:411 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:32121520-32121670	HPF	lung:	n/a	n/a
2	RAD21	chr6:32121357-32121889	Hela-S3	cervix:	n/a	n/a
3	SMARCC1	chr6:32120325-32122905	Hela-S3	cervix:	n/a	n/a
4	JUND	chr6:32120617-32123063	SK-N-SH	brain:	n/a	chr6:32121238-32121249
5	ELK1	chr6:32121591-32122068	K562	blood:	n/a	n/a
6	CTCF	chr6:32121480-32121630	AG10803	skin:	n/a	n/a
7	POLR2A	chr6:32120690-32122747	K562	blood:	n/a	n/a
8	TAF1	chr6:32121134-32122639	HepG2	liver:	n/a	n/a
9	POLR2A	chr6:32120299-32122815	K562	blood:	n/a	n/a
10	CEBPB	chr6:32121544-32122101	HepG2	liver:	n/a	n/a
11	POLR2A	chr6:32121161-32121620	H1-hESC	embryonic stem cell:	n/a	n/a
12	MXI1	chr6:32121093-32122781	HepG2	liver:	n/a	n/a
13	EGR1	chr6:32121464-32122691	K562	blood:	n/a	chr6:32122193-32122208
14	CTCF	chr6:32121531-32121651	Medullo	brain:	n/a	n/a
15	CTCFL	chr6:32121479-32121611	K562	blood:	n/a	n/a
16	POLR2A	chr6:32121073-32122702	Hela-S3	cervix:	n/a	n/a
17	CTCF	chr6:32121460-32121610	HRPEpiC	eye:	n/a	n/a
18	MXI1	chr6:32121402-32122714	K562	blood:	n/a	n/a
19	POLR2A	chr6:32120702-32122685	K562	blood:	n/a	n/a
20	CTCF	chr6:32121500-32121650	HMEC	breast:	n/a	n/a
21	BRCA1	chr6:32121575-32122726	HepG2	liver:	n/a	n/a
22	CTCF	chr6:32121500-32121650	HEEpiC	esophagus:	n/a	n/a
23	REST	chr6:32121317-32122123	HepG2	liver:	n/a	chr6:32121771-32121785
24	CTCF	chr6:32121460-32121610	GM12878	blood:	n/a	n/a
25	MAX	chr6:32120688-32122917	HepG2	liver:	n/a	chr6:32122674-32122683
26	CTCF	chr6:32121540-32121690	HepG2	liver:	n/a	n/a
27	CTCF	chr6:32121460-32121610	Caco-2	colon:	n/a	n/a
28	TCF12	chr6:32121568-32122662	ECC-1	luminal epithelium:	n/a	chr6:32122567-32122574
29	CTCF	chr6:32121500-32121650	HA-sp	spinal cord:	n/a	n/a
30	HDAC2	chr6:32121417-32122208	HepG2	liver:	n/a	n/a
31	CTCF	chr6:32121500-32121650	HPF	lung:	n/a	n/a
32	GTF2B	chr6:32121088-32122432	K562	blood:	n/a	n/a
33	ZBTB7A	chr6:32121379-32122760	ECC-1	luminal epithelium:	n/a	n/a
34	MXI1	chr6:32120533-32123084	SK-N-SH	brain:	n/a	n/a
35	POLR2A	chr6:32120566-32123138	K562	blood:	n/a	n/a
36	POLR2A	chr6:32120971-32122299	HCT-116	colon:	n/a	n/a
37	POLR2A	chr6:32120794-32122722	K562	blood:	n/a	n/a
38	CTCF	chr6:32121500-32121650	HUVEC	blood vessel:	n/a	n/a
39	POLR2A	chr6:32120748-32122996	K562	blood:	n/a	n/a
40	POLR2A	chr6:32121180-32122463	HCT-116	colon:	n/a	n/a
41	ELF1	chr6:32121564-32121928	A549	lung:	n/a	n/a
42	CTCF	chr6:32121560-32121710	AG09309	skin:	n/a	n/a
43	CTCF	chr6:32121500-32121650	SK-N-SH_RA	brain:	n/a	n/a
44	CREB1	chr6:32121026-32123000	HepG2	liver:	n/a	n/a
45	ZNF143	chr6:32121572-32122673	Hela-S3	cervix:	n/a	chr6:32121906-32121925
46	TAF1	chr6:32121589-32122227	PFSK-1	brain:	n/a	n/a
47	ZNF143	chr6:32121480-32122704	K562	blood:	n/a	chr6:32121906-32121925
48	MAX	chr6:32121502-32122800	ECC-1	luminal epithelium:	n/a	chr6:32122674-32122683
49	MAX	chr6:32121429-32122704	A549	lung:	n/a	chr6:32122674-32122683
50	EP300	chr6:32121514-32122617	HepG2	liver:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:32121555-32121605	SK-N-SH	brain:	n/a
2	chr6:32121566-32121616	Hela-S3	cervix:	n/a
3	chr6:32121566-32121616	HPAEpiC	pulmonary alveolar:	n/a
4	chr6:32121555-32121605	HRCEpiC	kidney:	n/a
5	chr6:32121566-32121616	HCT-116	colon:	n/a
6	chr6:32121566-32121616	AoSMC	blood vessel:	n/a
7	chr6:32121555-32121605	AG09319	gingival:	n/a
8	chr6:32121566-32121616	AG09319	gingival:	n/a
9	chr6:32121566-32121616	H1-hESC	embryonic stem cell:	embryo
10	chr6:32121566-32121616	HRCEpiC	kidney:	n/a
11	chr6:32121566-32121616	U87	brain:	n/a
12	chr6:32121555-32121605	HCF	heart:	n/a
13	chr6:32121555-32121605	MCF-7	breast:	n/a
14	chr6:32121566-32121616	SK-N-MC	brain:	n/a
15	chr6:32121555-32121605	Caco-2	colon:	n/a
16	chr6:32121566-32121616	AG10803	skin:	n/a
17	chr6:32121566-32121616	PrEC	prostate:	n/a
18	chr6:32121566-32121616	MCF10A-Er-Src	breast:	n/a
19	chr6:32121566-32121616	HepG2	liver:	n/a
20	chr6:32121566-32121616	K562	blood:	n/a
21	chr6:32121566-32121616	ProgFib	skin:	n/a
22	chr6:32121566-32121616	HEK293	kidney:	embryo
23	chr6:32121555-32121605	NHDF-neo	bronchial:	n/a
24	chr6:32121555-32121605	BJ	skin:	n/a
25	chr6:32121555-32121605	ECC-1	luminal epithelium:	n/a
26	chr6:32121566-32121616	SK-N-SH	brain:	n/a
27	chr6:32121555-32121605	U87	brain:	n/a
28	chr6:32121566-32121616	GM12878	blood:	n/a
29	chr6:32121555-32121605	Hela-S3	cervix:	n/a
30	chr6:32121566-32121616	NHBE	bronchial:	n/a
31	chr6:32121566-32121616	BJ	skin:	n/a
32	chr6:32121566-32121616	SKMC	muscle:	n/a
33	chr6:32121555-32121605	HEK293	kidney:	embryo
34	chr6:32121555-32121605	A549	lung:	n/a
35	chr6:32121555-32121605	AG04450	lung:	fetal
36	chr6:32121566-32121616	HCPEpiC	choroid plexus:	n/a
37	chr6:32121555-32121605	BE2_C	brain:	n/a
38	chr6:32121566-32121616	NT2-D1	testis:	n/a
39	chr6:32121555-32121605	HCM	heart:	n/a
40	chr6:32121555-32121605	AG04449	skin:	fetal
41	chr6:32121555-32121605	PFSK-1	brain:	n/a
42	chr6:32121555-32121605	ovcar-3	ovarian:	n/a
43	chr6:32121555-32121605	ProgFib	skin:	n/a
44	chr6:32121555-32121605	T-47D	breast:	n/a
45	chr6:32121555-32121605	Jurkat	blood:	n/a
46	chr6:32121555-32121605	AG09309	skin:	n/a
47	chr6:32121555-32121605	HMEC	breast:	n/a
48	chr6:32121566-32121616	GM12891	blood:	n/a
49	chr6:32121566-32121616	HRE	kidney:	n/a
50	chr6:32121555-32121605	HPAEpiC	pulmonary alveolar:	n/a

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:32092991..32098157-chr6:32120638..32123369,8	MCF-7	breast:
2	chr11:73087296..73087966-chr6:32120972..32121910,2	Hela-S3	cervix:
3	chr6:32120171..32123942-chr6:32124306..32127652,6	K562	blood:
4	chr6:32119715..32123835-chr6:32132075..32139187,7	MCF-7	breast:
5	chr6:32093127..32099788-chr6:32117635..32125818,23	K562	blood:
6	chr6:32075391..32078384-chr6:32120601..32122680,2	K562	blood:
7	chr6:31867782..31870627-chr6:32121344..32123906,2	K562	blood:
8	chr6:32120281..32121979-chr6:32162603..32165254,2	MCF-7	breast:
9	chr6:32119953..32121978-chr6:32160445..32163462,3	MCF-7	breast:
10	chr6:32121385..32123700-chr6:32124923..32127275,2	MCF-7	breast:
11	chr6:32121547..32123431-chr6:32124624..32127315,2	MCF-7	breast:
12	chr6:32119236..32123483-chr6:32143856..32148114,6	MCF-7	breast:
13	chr6:32093545..32101236-chr6:32120105..32124952,17	MCF-7	breast:
14	chr6:32117996..32123374-chr6:32143500..32146983,4	MCF-7	breast:
15	chr6:32116953..32128256-chr6:32128373..32148325,54	K562	blood:
16	chr6:31938655..31941642-chr6:32120425..32122384,2	K562	blood:
17	chr6:31939382..31941038-chr6:32120778..32122360,2	K562	blood:
18	chr6:32120728..32121661-chr6:32162944..32163486,2	K562	blood:
19	chr6:32082980..32086788-chr6:32120307..32122221,3	MCF-7	breast:
20	chr6:32112269..32118612-chr6:32118921..32122909,10	MCF-7	breast:
21	chr6:32120233..32126271-chr6:32158822..32166984,18	K562	blood:
22	chr6:32093775..32101330-chr6:32116233..32126080,28	K562	blood:
23	chr6:32085766..32089090-chr6:32120902..32124817,4	K562	blood:
24	chr6:32085563..32088758-chr6:32119743..32123007,4	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AGPAT1-1	chr6:32121514-32121737	NONHSAT108881
2	lnc-AGPAT1-1	chr6:32121543-32121613	NONHSAT108884
3	lnc-AGPAT1-1	chr6:32121514-32121613	NONHSAT108886
4	lnc-AGPAT1-1	chr6:32121514-32121613	NONHSAT108885
5	lnc-AGPAT1-1	chr6:32121514-32121685	NONHSAT108883
6	lnc-AGPAT1-1	chr6:32121543-32121613	NONHSAT108882

No data

Variant related genes	Relation type
PRRT1	TF binding region
PPT2-EGFL8	TF binding region
PPT2	TF binding region
PPT2	CpG island
PRRT1	CpG island
PPT2-EGFL8	CpG island
ENSG00000241404	Chromatin interaction
ENSG00000204348	Chromatin interaction
ENSG00000204310	Chromatin interaction
ENSG00000204366	Chromatin interaction
ENSG00000221988	Chromatin interaction
ENSG00000204315	Chromatin interaction
ENSG00000204344	Chromatin interaction
ENSG00000213676	Chromatin interaction
ENSG00000204314	Chromatin interaction
ENSG00000258388	Chromatin interaction
ENSG00000204308	Chromatin interaction
ENSG00000168477	Chromatin interaction
ENSG00000213654	Chromatin interaction
ENSG00000166278	Chromatin interaction
ENSG00000054967	Chromatin interaction
ENSG00000204301	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1035798	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1061807	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1800624	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2228628	0.86[AMR][1000 genomes]
rs2269424	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4433012	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4713505	0.86[AMR][1000 genomes]
rs4713506	0.85[AMR][1000 genomes]
rs8111	0.83[AMR][1000 genomes]
rs9267802	0.86[AMR][1000 genomes]
rs9267803	0.82[AMR][1000 genomes]
rs9267806	0.85[AMR][1000 genomes]
rs9267817	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
2	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
3	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
4	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
5	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
6	nsv601961	chr6:31868322-32484368	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
7	esv2758043	chr6:31871512-32209113	Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
8	esv2759415	chr6:31871512-32209113	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
9	nsv601972	chr6:31947594-32484368	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
10	nsv601975	chr6:31949352-32484368	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
11	nsv601976	chr6:31949352-32508887	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
12	nsv601977	chr6:31949352-32651056	Bivalent Enhancer Flanking Active TSS Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
13	nsv601980	chr6:31950266-32484368	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
14	nsv601982	chr6:31951207-32484368	Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
15	nsv601983	chr6:31951367-32484368	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
16	nsv601984	chr6:31951912-32484368	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
17	nsv601999	chr6:31952422-32484368	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
18	nsv602000	chr6:31952422-32552416	Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
19	nsv602015	chr6:31953467-32481507	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
20	nsv602016	chr6:31953467-32484368	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
21	nsv602017	chr6:31953467-32505730	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
22	nsv602018	chr6:31953467-32509985	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
23	nsv602019	chr6:31953467-32779803	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
24	nsv602029	chr6:31955572-32484368	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
25	nsv602035	chr6:31959480-32484368	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
26	nsv602036	chr6:31959878-32484368	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
27	nsv602052	chr6:31972034-32481507	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
28	nsv602053	chr6:31972034-32484368	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
29	nsv602054	chr6:31972034-32779803	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
30	nsv602086	chr6:31986320-32484368	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
31	nsv1024599	chr6:32007556-32481240	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
32	nsv830629	chr6:32043978-32189787	Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
33	nsv1033939	chr6:32048657-32196256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
34	nsv462876	chr6:32064726-32171683	Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
35	nsv602104	chr6:32064726-32171683	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
36	nsv884701	chr6:32089549-32130329	Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
37	nsv884703	chr6:32112559-32123448	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
38	nsv884704	chr6:32115226-32121932	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
39	nsv884705	chr6:32116313-32122476	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
40	nsv884706	chr6:32116313-32146492	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9267810	HLA-DRB5	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32117800-32121600	Enhancers	Spleen	Spleen
2	chr6:32118400-32122800	Active TSS	Aorta	Aorta
3	chr6:32119200-32121800	Enhancers	Lung	lung
4	chr6:32119200-32122800	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr6:32119400-32122400	Active TSS	Left Ventricle	heart
6	chr6:32119400-32123000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:32119800-32121600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:32119800-32121800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:32119800-32121800	Flanking Active TSS	Stomach Smooth Muscle	stomach
10	chr6:32120000-32121600	Enhancers	Liver	Liver
11	chr6:32120000-32121800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr6:32120200-32121600	Enhancers	Primary T cells from cord blood	blood
13	chr6:32120200-32121600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:32120200-32121600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr6:32120200-32121600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr6:32120200-32121800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:32120400-32121600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr6:32120400-32121600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:32120400-32121600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:32120400-32122400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr6:32120400-32122600	Active TSS	Brain Substantia Nigra	brain
22	chr6:32120600-32121600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr6:32120600-32121600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr6:32120600-32121600	Flanking Active TSS	Brain Germinal Matrix	brain
25	chr6:32120600-32121600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
26	chr6:32120600-32121800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:32120600-32121800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr6:32120600-32122400	Active TSS	Colonic Mucosa	Colon
29	chr6:32120600-32122600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:32120600-32122600	Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr6:32120600-32122600	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr6:32120600-32122800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:32120600-32122800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:32120600-32122800	Active TSS	Right Atrium	heart
35	chr6:32120600-32122800	Active TSS	NHDF-Ad	bronchial
36	chr6:32120600-32123000	Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr6:32120600-32123000	Active TSS	Ovary	ovary
38	chr6:32120600-32123400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:32120600-32123400	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr6:32120800-32121600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
41	chr6:32120800-32121600	Flanking Active TSS	Dnd41	blood
42	chr6:32120800-32121800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr6:32120800-32121800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
44	chr6:32120800-32121800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
45	chr6:32120800-32121800	Flanking Active TSS	Placenta	Placenta
46	chr6:32120800-32122800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:32120800-32122800	Active TSS	Small Intestine	intestine
48	chr6:32120800-32123000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr6:32121000-32121800	Flanking Active TSS	Primary hematopoietic stem cells	blood
50	chr6:32121000-32121800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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