Variant report

Variant	rs9268
Chromosome Location	chr12:48888689-48888690
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11168599	0.92[CHB][hapmap];0.80[ASN][1000 genomes]
rs11458	0.92[CHB][hapmap];0.80[ASN][1000 genomes]
rs12371700	0.92[CHB][hapmap]
rs12815544	0.83[JPT][hapmap]
rs2731091	0.83[CHB][hapmap]
rs2731094	0.83[CHB][hapmap]
rs7302209	0.80[ASN][1000 genomes]
rs7958521	0.84[CHB][hapmap]
rs7972785	0.80[ASN][1000 genomes]
rs7974213	0.92[CHB][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv975416	chr12:48882416-48893049	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48887000-48891800	Weak transcription	Brain Hippocampus Middle	brain
2	chr12:48887600-48890000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr12:48888600-48888800	ZNF genes & repeats	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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