Variant report
Variant | rs927559 |
---|---|
Chromosome Location | chr20:16102846-16102847 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1323304 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs1323311 | 0.99[EUR][1000 genomes] |
rs1407825 | 0.98[EUR][1000 genomes] |
rs1890496 | 0.93[EUR][1000 genomes] |
rs1923954 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1923957 | 0.93[EUR][1000 genomes] |
rs1923958 | 0.93[EUR][1000 genomes] |
rs2760541 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2760542 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2760544 | 0.99[EUR][1000 genomes] |
rs2760548 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2760552 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs2760554 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs2760555 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs2760559 | 0.93[EUR][1000 genomes] |
rs2788909 | 0.99[EUR][1000 genomes] |
rs2788930 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs6034397 | 0.93[EUR][1000 genomes] |
rs6043769 | 0.93[EUR][1000 genomes] |
rs6080133 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs912181 | 0.98[EUR][1000 genomes] |
rs912182 | 0.98[EUR][1000 genomes] |
rs912183 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs927560 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | esv3447866 | chr20:15799286-16115291 | Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv1059778 | chr20:15999519-16165895 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
4 | nsv544207 | chr20:15999519-16165895 | Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
5 | esv3424095 | chr20:16094018-16103817 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh | n/a | n/a | inside rSNPs | n/a |
6 | esv3439085 | chr20:16094028-16103826 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh | n/a | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:16088400-16106000 | Weak transcription | Psoas Muscle | Psoas |
2 | chr20:16098000-16103600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |