Variant report

Variant	rs927657
Chromosome Location	chr6:45164355-45164356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12661877	0.90[ASN][1000 genomes]
rs12664261	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13197348	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs13204295	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs13209909	0.83[EUR][1000 genomes]
rs1321081	0.83[YRI][hapmap]
rs13220256	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs35147379	0.83[EUR][1000 genomes]
rs35946050	0.83[EUR][1000 genomes]
rs36011458	0.83[EUR][1000 genomes]
rs36095973	0.83[EUR][1000 genomes]
rs6925198	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6933244	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940998	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7743772	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764679	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45160000-45167000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:45160200-45166000	Weak transcription	HepG2	liver
3	chr6:45160600-45167000	Weak transcription	Fetal Intestine Large	intestine
4	chr6:45162000-45171800	Enhancers	Dnd41	blood
5	chr6:45163000-45164800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:45163800-45164600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr6:45164000-45164400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:45164000-45164800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr6:45164200-45164600	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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