Variant report

Variant	rs928001
Chromosome Location	chr13:67730370-67730371
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2025970	1.00[JPT][hapmap]
rs2225201	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4883799	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4884717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7324254	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7324330	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7324857	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7329215	0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7998295	0.82[ASN][1000 genomes]
rs9541025	0.81[CEU][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9541026	0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9541027	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1053514	chr13:67687520-67775011	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67722200-67735400	Weak transcription	Left Ventricle	heart
2	chr13:67725400-67731600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:67729400-67730400	Enhancers	A549	lung
4	chr13:67729600-67730400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr13:67730000-67730400	Flanking Active TSS	Brain Hippocampus Middle	brain
6	chr13:67730000-67730600	Enhancers	Gastric	stomach
7	chr13:67730000-67730800	Active TSS	Brain Angular Gyrus	brain
8	chr13:67730000-67731000	Active TSS	Brain Cingulate Gyrus	brain
9	chr13:67730200-67730400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr13:67730200-67730400	Active TSS	Brain Substantia Nigra	brain
11	chr13:67730200-67730600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
12	chr13:67730200-67730600	Enhancers	Pancreas	Pancrea
13	chr13:67730200-67730600	Flanking Active TSS	K562	blood
14	chr13:67730200-67731000	Active TSS	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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