Variant report

Variant	rs9280628
Chromosome Location	chr6:29616522-29616523
allele	-/A/AA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv527037	chr6:29615822-29624112	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29609600-29617200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:29610000-29617200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:29610600-29617200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:29610600-29617400	Weak transcription	K562	blood
5	chr6:29610800-29617200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:29611400-29616800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:29612000-29616800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:29615800-29616600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:29615800-29616600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:29615800-29617200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:29615800-29617200	Weak transcription	HMEC	breast
12	chr6:29615800-29617400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:29616000-29617200	Weak transcription	NHEK	skin
14	chr6:29616200-29617400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr6:29616400-29617200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr6:29616400-29618600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links