Variant report

Variant	rs9281052
Chromosome Location	chr6:30776144-30776145
allele	-/CT/CTT/CTTCTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30775890..30781762-chr6:30785090..30789723,9	MCF-7	breast:
2	chr6:30766009..30775294-chr6:30775700..30782710,15	MCF-7	breast:
3	chr6:30765847..30772235-chr6:30775518..30781372,10	K562	blood:
4	chr6:30703666..30722133-chr6:30776009..30801352,184	MCF-7	breast:
5	chr6:30687466..30692169-chr6:30775918..30784078,7	K562	blood:
6	chr6:30774980..30776626-chr6:30874268..30876339,2	K562	blood:
7	chr6:30706744..30716171-chr6:30774931..30783832,28	MCF-7	breast:
8	chr6:30776031..30777609-chr6:30851377..30854033,2	MCF-7	breast:
9	chr6:30745917..30748118-chr6:30776110..30778177,2	K562	blood:
10	chr6:30716968..30722090-chr6:30774929..30783584,12	MCF-7	breast:
11	chr6:30772437..30774546-chr6:30775757..30777964,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137411	Chromatin interaction
ENSG00000137331	Chromatin interaction
ENSG00000204580	Chromatin interaction
ENSG00000272273	Chromatin interaction
ENSG00000213780	Chromatin interaction
ENSG00000264731	Chromatin interaction
ENSG00000272540	Chromatin interaction
ENSG00000263608	Chromatin interaction
ENSG00000137312	Chromatin interaction
ENSG00000196230	Chromatin interaction
ENSG00000201988	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	esv3430377	chr6:30443802-30814426	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	967 gene(s)	inside rSNPs	diseases
5	esv2758041	chr6:30644693-30816319	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	223 gene(s)	inside rSNPs	diseases
6	esv2759413	chr6:30644693-30816319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	223 gene(s)	inside rSNPs	diseases
7	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
8	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
9	nsv884105	chr6:30775579-30786676	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv884106	chr6:30775579-30787323	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30761600-30781000	Weak transcription	Small Intestine	intestine
2	chr6:30767200-30781200	Weak transcription	Gastric	stomach
3	chr6:30771200-30777400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:30772200-30777200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:30772400-30777000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:30772600-30776600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:30772600-30777600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:30772600-30778000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:30772600-30778400	Weak transcription	Fetal Thymus	thymus
10	chr6:30772800-30776400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr6:30772800-30778200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:30773000-30776600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:30773000-30778600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:30773400-30778200	Weak transcription	Primary T cells from cord blood	blood
15	chr6:30773800-30776400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr6:30774600-30777200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:30774600-30777200	Weak transcription	K562	blood
18	chr6:30774800-30779800	Weak transcription	HepG2	liver
19	chr6:30775000-30778400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:30775000-30778600	Weak transcription	Placenta	Placenta
21	chr6:30775600-30776400	Weak transcription	Primary B cells from cord blood	blood
22	chr6:30775600-30777800	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr6:30775800-30776600	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr6:30776000-30776200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:30776000-30776600	Enhancers	Monocytes-CD14+_RO01746	blood

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