Variant report

Variant	rs9283745
Chromosome Location	chr5:36685351-36685352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36683268..36685538-chr5:36688361..36690027,2	MCF-7	breast:
2	chr5:36680307..36683555-chr5:36684792..36688683,3	K562	blood:

Variant related genes	Relation type
ENSG00000079215	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10941313	0.98[AFR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7704118	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7726798	0.98[AFR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv969921	chr5:36645147-36696229	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv880571	chr5:36675699-36710205	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36655400-36690000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:36658200-36690000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:36659000-36689400	Weak transcription	Osteobl	bone
4	chr5:36662000-36690000	Weak transcription	Psoas Muscle	Psoas
5	chr5:36663000-36689600	Weak transcription	Fetal Brain Female	brain
6	chr5:36666000-36690000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:36667400-36688200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:36667600-36689200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:36668200-36690000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:36668400-36689200	Weak transcription	NHEK	skin
11	chr5:36668600-36690000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:36671400-36690200	Weak transcription	Pancreas	Pancrea
13	chr5:36673600-36689400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:36673600-36689800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:36674200-36690000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:36674400-36689400	Weak transcription	HMEC	breast
17	chr5:36674400-36690000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr5:36675200-36686200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:36676800-36689200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr5:36677000-36685800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr5:36677400-36690000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr5:36678000-36689400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:36678000-36690200	Weak transcription	Lung	lung
24	chr5:36678400-36686400	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr5:36679000-36690200	Weak transcription	Gastric	stomach
26	chr5:36680000-36690000	Weak transcription	Right Ventricle	heart
27	chr5:36680000-36690200	Weak transcription	Hela-S3	cervix
28	chr5:36680800-36685800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:36680800-36688600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr5:36681000-36686200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr5:36682200-36690200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr5:36683400-36686200	Enhancers	Placenta	Placenta
33	chr5:36684000-36685400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:36684000-36685600	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr5:36684000-36686600	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr5:36684000-36687200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr5:36684200-36693200	Weak transcription	Spleen	Spleen
38	chr5:36684400-36687000	Strong transcription	Left Ventricle	heart
39	chr5:36684600-36686400	Enhancers	Fetal Lung	lung
40	chr5:36684600-36686400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr5:36684600-36687400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr5:36684600-36689400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr5:36684600-36689400	Weak transcription	Brain Angular Gyrus	brain
44	chr5:36684600-36689400	Weak transcription	Esophagus	oesophagus
45	chr5:36684600-36689400	Weak transcription	NHLF	lung
46	chr5:36684600-36690000	Weak transcription	Fetal Brain Male	brain
47	chr5:36684800-36685600	Enhancers	Primary hematopoietic stem cells	blood
48	chr5:36684800-36686200	Weak transcription	Brain Hippocampus Middle	brain
49	chr5:36684800-36686200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr5:36684800-36688800	Weak transcription	Fetal Heart	heart

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