Variant report

Variant	rs928482
Chromosome Location	chr6:34215221-34215222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:34211942..34216855-chr6:34244859..34247946,7	K562	blood:
2	chr6:34214802..34216677-chr6:34541766..34544478,2	K562	blood:
3	chr6:34023047..34025641-chr6:34212999..34215804,2	K562	blood:
4	chr6:34212618..34219497-chr6:34387813..34394246,15	K562	blood:
5	chr6:34214571..34216737-chr6:34309233..34311711,2	K562	blood:
6	chr6:34213633..34219276-chr6:34358105..34363296,16	MCF-7	breast:
7	chr6:34194289..34196205-chr6:34214333..34216675,2	MCF-7	breast:
8	chr12:110867141..110868642-chr6:34214071..34216786,2	K562	blood:
9	chr6:34214133..34219385-chr6:34356600..34362053,16	K562	blood:
10	chr22:43011046..43012650-chr6:34212802..34215744,2	K562	blood:
11	chr6:34148396..34150316-chr6:34214119..34215823,2	K562	blood:
12	chr6:34213313..34215727-chr6:34426612..34429528,2	K562	blood:
13	chr6:34212832..34215657-chr6:34236331..34238214,2	K562	blood:
14	chr6:34213440..34216386-chr6:34253142..34255941,3	K562	blood:
15	chr6:34213271..34216140-chr6:34224138..34225758,2	K562	blood:
16	chr6:33677926..33680959-chr6:34212857..34215547,3	K562	blood:
17	chr6:34202383..34217863-chr6:34357259..34364960,37	K562	blood:
18	chr6:34214030..34216248-chr6:34274968..34277546,2	K562	blood:
19	chr6:34213810..34216675-chr6:34392021..34394891,5	MCF-7	breast:
20	chr6:34163086..34165732-chr6:34214171..34216119,2	MCF-7	breast:
21	chr6:34209798..34218235-chr6:34387971..34396103,20	K562	blood:
22	chr6:34214507..34216888-chr6:34245546..34249056,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NUDT3-4	chr6:34214807-34215641	NONHSAT112118

No data

Variant related genes	Relation type
ENSG00000124493	Chromatin interaction
ENSG00000272325	Chromatin interaction
ENSG00000270800	Chromatin interaction
ENSG00000137288	Chromatin interaction
ENSG00000124614	Chromatin interaction
ENSG00000225339	Chromatin interaction
ENSG00000270022	Chromatin interaction
ENSG00000196114	Chromatin interaction
ENSG00000258011	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10080749	0.99[ASN][1000 genomes]
rs10807138	0.88[ASN][1000 genomes]
rs10947487	0.80[AMR][1000 genomes]
rs1150777	0.99[ASN][1000 genomes]
rs1150779	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1150781	0.95[ASN][1000 genomes]
rs12530053	0.85[ASN][1000 genomes]
rs1573905	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1759628	0.87[AMR][1000 genomes]
rs1776891	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1776899	0.84[AMR][1000 genomes]
rs2483211	0.91[ASN][1000 genomes]
rs2780216	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2797967	0.89[ASN][1000 genomes]
rs28539536	0.84[AMR][1000 genomes]
rs28844869	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3997803	0.83[ASN][1000 genomes]
rs4711389	0.88[AMR][1000 genomes]
rs4713761	0.87[AMR][1000 genomes]
rs4713763	0.85[ASN][1000 genomes]
rs4713764	0.83[ASN][1000 genomes]
rs4713765	0.85[ASN][1000 genomes]
rs56657958	0.89[AMR][1000 genomes]
rs57026767	0.91[ASN][1000 genomes]
rs59412811	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6457769	0.85[ASN][1000 genomes]
rs6899897	0.85[ASN][1000 genomes]
rs6900030	0.85[ASN][1000 genomes]
rs6900387	0.82[ASN][1000 genomes]
rs6909732	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922699	0.85[ASN][1000 genomes]
rs6922851	0.85[ASN][1000 genomes]
rs6932690	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419191	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73420913	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7740907	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7753987	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761883	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7765484	0.85[ASN][1000 genomes]
rs7768482	0.83[ASN][1000 genomes]
rs9348936	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9366846	0.94[ASN][1000 genomes]
rs9394200	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9394201	0.91[ASN][1000 genomes]
rs9394202	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9461968	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9461969	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9461975	0.83[ASN][1000 genomes]
rs9469750	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9469757	0.85[ASN][1000 genomes]
rs9469758	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9469762	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885781	chr6:34110257-34247661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv885784	chr6:34187206-34246714	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv602865	chr6:34203406-34217181	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
6	esv1798756	chr6:34203406-34319041	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	esv1798835	chr6:34204183-34319041	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	esv1840881	chr6:34204285-34231570	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	esv1792088	chr6:34204285-34318837	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
10	esv1793127	chr6:34204285-34319041	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
11	nsv969388	chr6:34213490-34240324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34205400-34216600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:34206400-34215800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:34206400-34216000	Weak transcription	Fetal Kidney	kidney
4	chr6:34206400-34216000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:34207600-34216600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:34207800-34215600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:34207800-34215800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:34210200-34215800	Weak transcription	Pancreas	Pancrea
9	chr6:34210400-34215800	Weak transcription	Liver	Liver
10	chr6:34211800-34215800	Weak transcription	Primary T cells from cord blood	blood
11	chr6:34211800-34215800	Weak transcription	Fetal Intestine Large	intestine
12	chr6:34212000-34215600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:34212200-34215400	Enhancers	NH-A	brain
14	chr6:34212200-34215600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:34212400-34215400	Weak transcription	Brain Angular Gyrus	brain
16	chr6:34212400-34215400	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:34212400-34215400	Weak transcription	Psoas Muscle	Psoas
18	chr6:34212400-34215600	Weak transcription	Colonic Mucosa	Colon
19	chr6:34212400-34215600	Enhancers	HMEC	breast
20	chr6:34212400-34215800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:34212400-34215800	Weak transcription	Fetal Heart	heart
22	chr6:34212400-34215800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:34212400-34215800	Weak transcription	Small Intestine	intestine
24	chr6:34212400-34216000	Enhancers	HUVEC	blood vessel
25	chr6:34212600-34215400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:34212600-34215600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:34212600-34215600	Weak transcription	HepG2	liver
28	chr6:34212600-34215800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:34212600-34215800	Weak transcription	Adipose Nuclei	Adipose
30	chr6:34212600-34215800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr6:34212600-34216000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr6:34212600-34216200	Weak transcription	Ovary	ovary
33	chr6:34212800-34215400	Weak transcription	Left Ventricle	heart
34	chr6:34212800-34215600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:34212800-34215600	Weak transcription	Right Ventricle	heart
36	chr6:34212800-34215600	Weak transcription	Stomach Mucosa	stomach
37	chr6:34212800-34215800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:34213000-34215400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:34213000-34215600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:34213000-34215800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:34213000-34215800	Weak transcription	HSMMtube	muscle
42	chr6:34213200-34215400	Strong transcription	Lung	lung
43	chr6:34213400-34216000	Weak transcription	Thymus	Thymus
44	chr6:34213600-34215400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr6:34213600-34215800	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr6:34213600-34216000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr6:34213800-34215800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:34213800-34216000	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr6:34214000-34215800	Genic enhancers	Primary B cells from peripheral blood	blood
50	chr6:34214000-34216000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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