Variant report

Variant	rs9285864
Chromosome Location	chr5:108461592-108461593
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10036203	0.85[JPT][hapmap]
rs10040959	0.81[CEU][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10043540	0.87[MEX][hapmap]
rs10056058	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10059461	0.98[ASN][1000 genomes]
rs10063845	0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10074158	0.98[ASN][1000 genomes]
rs10477436	0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs10477945	0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11738117	0.88[ASN][1000 genomes]
rs17450387	0.90[CEU][hapmap];0.80[LWK][hapmap];0.87[MEX][hapmap];0.84[MKK][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2195944	0.82[CEU][hapmap];0.80[LWK][hapmap];0.84[MKK][hapmap];0.83[YRI][hapmap]
rs2217649	0.83[LWK][hapmap];0.84[MKK][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes]
rs2416200	0.82[CEU][hapmap];0.81[LWK][hapmap];0.83[MKK][hapmap]
rs4957567	0.82[CEU][hapmap]
rs4957798	0.90[CEU][hapmap];0.83[LWK][hapmap];0.87[MEX][hapmap];0.84[MKK][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56227556	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73779055	0.92[ASN][1000 genomes]
rs7735111	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7737268	0.88[CHB][hapmap]
rs9326759	0.80[LWK][hapmap];0.87[MKK][hapmap];0.83[YRI][hapmap]
rs9326760	0.81[CEU][hapmap]
rs9326761	0.88[CHD][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv4953	chr5:108443905-108488747	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	esv2756048	chr5:108448101-108542101	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108442000-108497400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:108456800-108472800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:108461200-108462200	Flanking Active TSS	Dnd41	blood
4	chr5:108461200-108462800	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links