Variant report

Variant	rs9288103
Chromosome Location	chr2:153323912-153323913
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:153190311..153192513-chr2:153322864..153325186,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157827	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10166703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10173398	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10193625	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10195380	1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10208776	0.82[CEU][hapmap]
rs10432493	0.82[CEU][hapmap]
rs10432494	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11892232	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11892859	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11893683	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12614608	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12617686	0.81[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12623070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2068886	0.87[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2346204	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2881336	0.82[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4471845	0.93[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4613221	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4664585	0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6434078	0.95[JPT][hapmap]
rs6721741	0.82[JPT][hapmap]
rs6736639	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6737006	0.90[ASN][1000 genomes]
rs7425826	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7590079	1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834419	chr2:153179420-153381476	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3693436	chr2:153219836-153479857	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv875291	chr2:153251742-153339823	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1013777	chr2:153273637-153538546	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv2754362	chr2:153297577-153366129	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv875292	chr2:153308471-153357383	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2830258	chr2:153318339-153349165	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153317400-153328000	Enhancers	Brain Substantia Nigra	brain
2	chr2:153318400-153327200	Enhancers	HepG2	liver
3	chr2:153318600-153324600	Enhancers	Ovary	ovary
4	chr2:153319200-153325000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr2:153319400-153325600	Enhancers	Brain Cingulate Gyrus	brain
6	chr2:153320200-153325600	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr2:153320400-153324600	Enhancers	Fetal Brain Male	brain
8	chr2:153320600-153324600	Enhancers	Fetal Muscle Leg	muscle
9	chr2:153320600-153325000	Enhancers	Psoas Muscle	Psoas
10	chr2:153320600-153328400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr2:153320800-153329400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:153320800-153331600	Enhancers	Hela-S3	cervix
13	chr2:153321000-153324200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:153321000-153324200	Enhancers	Right Atrium	heart
15	chr2:153321000-153326200	Enhancers	Fetal Lung	lung
16	chr2:153321000-153329600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr2:153321200-153324400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr2:153321200-153324600	Enhancers	Placenta	Placenta
19	chr2:153321200-153325400	Enhancers	A549	lung
20	chr2:153321200-153326400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr2:153321200-153326800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:153321400-153324400	Enhancers	Placenta Amnion	Placenta Amnion
23	chr2:153321400-153324400	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr2:153321400-153324800	Enhancers	Aorta	Aorta
25	chr2:153321400-153326200	Enhancers	Primary B cells from peripheral blood	blood
26	chr2:153321600-153324400	Enhancers	Gastric	stomach
27	chr2:153321600-153324600	Enhancers	Left Ventricle	heart
28	chr2:153321600-153324800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr2:153321600-153324800	Enhancers	Fetal Stomach	stomach
30	chr2:153321600-153325000	Enhancers	HMEC	breast
31	chr2:153321600-153326800	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr2:153321800-153325400	Enhancers	Adipose Nuclei	Adipose
33	chr2:153321800-153325600	Enhancers	Brain Anterior Caudate	brain
34	chr2:153322000-153324000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr2:153322000-153324200	Enhancers	Brain Hippocampus Middle	brain
36	chr2:153322000-153324600	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr2:153322000-153324800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr2:153322000-153325200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr2:153322000-153325200	Weak transcription	HUVEC	blood vessel
40	chr2:153322000-153325600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr2:153322000-153325600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr2:153322200-153324800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr2:153322200-153325400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr2:153322400-153324000	Weak transcription	Pancreas	Pancrea
45	chr2:153322400-153325600	Weak transcription	Brain Germinal Matrix	brain
46	chr2:153322400-153326800	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr2:153322600-153324400	Enhancers	H9 Cell Line	embryonic stem cell
48	chr2:153322600-153324400	Enhancers	NHDF-Ad	bronchial
49	chr2:153322600-153324600	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr2:153322600-153324600	Enhancers	NHLF	lung

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