Variant report

Variant	rs9288368
Chromosome Location	chr2:206394400-206394401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:206387607..206389852-chr2:206392892..206394684,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10469758	0.83[AMR][1000 genomes]
rs10932117	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11684023	1.00[AMR][1000 genomes]
rs12471061	0.83[AMR][1000 genomes]
rs1473084	1.00[AMR][1000 genomes]
rs1974688	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1988085	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2160383	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2216109	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2878751	1.00[AMR][1000 genomes]
rs4618031	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4625893	1.00[AMR][1000 genomes]
rs4675533	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4675534	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6730102	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6743334	1.00[AMR][1000 genomes]
rs7349394	1.00[AMR][1000 genomes]
rs7355229	0.87[AFR][1000 genomes]
rs738074	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7594189	0.83[AMR][1000 genomes]
rs764150	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs975103	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs991689	1.00[AMR][1000 genomes]
rs9973667	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv10162	chr2:206272092-206525287	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv19770	chr2:206283097-206671319	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2751840	chr2:206314671-206512921	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1007821	chr2:206333129-206465451	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv584245	chr2:206346410-206464465	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206390000-206397400	Weak transcription	HSMM	muscle
2	chr2:206393400-206395000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:206393600-206394800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr2:206393800-206394400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:206393800-206395000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:206394400-206396000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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