Variant report

Variant	rs9288685
Chromosome Location	chr2:233987114-233987115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10193128	0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10201557	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55913569	0.84[EUR][1000 genomes]
rs6717453	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876009	chr2:233799400-233996429	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv876012	chr2:233899377-233996429	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233965800-233988200	Weak transcription	HUVEC	blood vessel
2	chr2:233969800-233996800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr2:233972800-233989000	Weak transcription	Lung	lung
4	chr2:233976000-233990800	Genic enhancers	Primary B cells from peripheral blood	blood
5	chr2:233978000-233989000	Weak transcription	Left Ventricle	heart
6	chr2:233978000-233991800	Weak transcription	Esophagus	oesophagus
7	chr2:233982200-233989000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr2:233982200-233997000	Weak transcription	Right Atrium	heart
9	chr2:233982400-233995000	Weak transcription	Colonic Mucosa	Colon
10	chr2:233982600-233995000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr2:233983400-233990000	Weak transcription	Right Ventricle	heart
12	chr2:233983400-233991600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr2:233983400-233993400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:233983600-233990000	Weak transcription	Adipose Nuclei	Adipose
15	chr2:233983800-233990200	Weak transcription	Brain Hippocampus Middle	brain
16	chr2:233984000-234003600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr2:233984800-233996400	Weak transcription	Brain Anterior Caudate	brain
18	chr2:233985400-233990000	Weak transcription	Gastric	stomach
19	chr2:233985600-233990600	Weak transcription	Liver	Liver
20	chr2:233985800-233989000	Weak transcription	Fetal Stomach	stomach
21	chr2:233986400-233989000	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr2:233986400-233993600	Strong transcription	Primary T cells from cord blood	blood
23	chr2:233986400-233993600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr2:233986600-233987200	Enhancers	Pancreas	Pancrea
25	chr2:233986600-233987400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr2:233986600-233987400	Genic enhancers	Spleen	Spleen
27	chr2:233986600-233987800	Genic enhancers	HepG2	liver
28	chr2:233986600-233988200	Genic enhancers	GM12878-XiMat	blood
29	chr2:233986600-233988800	Strong transcription	Fetal Thymus	thymus
30	chr2:233986600-233989600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr2:233986600-233989600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
32	chr2:233986600-233992000	Strong transcription	Dnd41	blood
33	chr2:233986600-233993000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr2:233986600-233993600	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr2:233986600-233993600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr2:233986600-233993600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr2:233986600-233993600	Strong transcription	Thymus	Thymus
38	chr2:233986600-233994200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr2:233986600-234001200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr2:233986600-234001600	Strong transcription	Primary hematopoietic stem cells	blood
41	chr2:233986600-234001800	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr2:233986800-233987200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr2:233986800-233987200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr2:233986800-233987200	Genic enhancers	Placenta	Placenta
45	chr2:233986800-233987600	Genic enhancers	Primary B cells from cord blood	blood
46	chr2:233986800-233992400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr2:233986800-233992600	Strong transcription	Duodenum Mucosa	Duodenum
48	chr2:233986800-233992800	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr2:233986800-233993400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
50	chr2:233986800-233994200	Strong transcription	Primary T helper cells fromperipheralblood	blood

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