Variant report

Variant	rs9289149
Chromosome Location	chr3:120593461-120593462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10934533	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12490201	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12493977	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12498064	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12632316	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12635124	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13314307	0.80[AMR][1000 genomes]
rs13316005	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13323408	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1394960	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1403717	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16831962	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16831974	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16831976	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1960320	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2220255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35147415	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4544547	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6438597	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7624337	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7624461	0.83[AMR][1000 genomes]
rs7624738	0.83[AMR][1000 genomes]
rs7646815	0.83[AMR][1000 genomes]
rs7648074	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7652758	0.83[AMR][1000 genomes]
rs9289150	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9289151	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9818910	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9819192	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9822141	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9824369	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9824653	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9826042	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9826303	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9831352	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9831814	0.83[AMR][1000 genomes]
rs9842745	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9843476	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9844059	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9844215	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9852152	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9855929	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9855953	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9859729	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9862685	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9868798	0.83[AMR][1000 genomes]
rs9878416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9881138	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007557	chr3:119892894-120764353	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv536706	chr3:119892894-120764353	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv869548	chr3:120320731-121076337	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv916869	chr3:120360281-120973169	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv877378	chr3:120381530-120606438	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv829700	chr3:120469191-120675763	Strong transcription Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv877380	chr3:120522716-120606438	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:120588200-120595000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:120591600-120595200	Enhancers	Ovary	ovary
3	chr3:120593000-120593600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:120593400-120593600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:120593400-120593600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:120593400-120593600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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