Variant report

Variant	rs9289820
Chromosome Location	chr3:150315985-150315986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:150315973-150317993	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150308650..150311598-chr3:150312485..150316009,3	K562	blood:

Variant related genes	Relation type
ENSG00000198843	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1133494	0.84[ASN][1000 genomes]
rs14434	0.84[ASN][1000 genomes]
rs2049229	0.84[ASN][1000 genomes]
rs2090916	0.84[ASN][1000 genomes]
rs2204113	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2868946	0.84[ASN][1000 genomes]
rs2868947	0.84[ASN][1000 genomes]
rs6440683	0.84[ASN][1000 genomes]
rs6440684	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7374917	0.84[ASN][1000 genomes]
rs7628889	0.84[ASN][1000 genomes]
rs7631544	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7631671	0.84[ASN][1000 genomes]
rs7638500	0.84[ASN][1000 genomes]
rs7642917	0.84[ASN][1000 genomes]
rs9289818	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9289820	SELT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150265600-150320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:150265600-150320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:150295600-150318600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:150300800-150316200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:150301600-150320200	Weak transcription	Small Intestine	intestine
6	chr3:150302400-150320000	Weak transcription	Brain Germinal Matrix	brain
7	chr3:150303000-150316400	Weak transcription	HUVEC	blood vessel
8	chr3:150303400-150316800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:150303600-150317400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:150303600-150319200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:150303800-150316200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:150303800-150316400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:150303800-150316400	Weak transcription	NH-A	brain
14	chr3:150303800-150316800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr3:150303800-150316800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:150303800-150316800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:150303800-150317200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:150303800-150317400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr3:150303800-150318000	Weak transcription	NHLF	lung
20	chr3:150303800-150318800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:150303800-150318800	Weak transcription	Fetal Lung	lung
22	chr3:150303800-150320000	Weak transcription	Colon Smooth Muscle	Colon
23	chr3:150303800-150320000	Weak transcription	Fetal Brain Female	brain
24	chr3:150303800-150320000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr3:150303800-150320800	Weak transcription	Lung	lung
26	chr3:150303800-150320800	Weak transcription	Spleen	Spleen
27	chr3:150304000-150316600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr3:150304000-150316600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:150304000-150316800	Weak transcription	Brain Anterior Caudate	brain
30	chr3:150304000-150320000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr3:150304000-150320000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr3:150304000-150320000	Weak transcription	Fetal Stomach	stomach
33	chr3:150304000-150320600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr3:150304400-150316400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr3:150304400-150317600	Weak transcription	HepG2	liver
36	chr3:150304400-150320000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr3:150304400-150320200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr3:150304400-150320600	Weak transcription	Ovary	ovary
39	chr3:150304600-150316400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr3:150304600-150318600	Weak transcription	Fetal Muscle Leg	muscle
41	chr3:150304800-150316200	Weak transcription	HSMM	muscle
42	chr3:150304800-150320400	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr3:150305000-150316600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr3:150305000-150316800	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr3:150305000-150317000	Weak transcription	Right Atrium	heart
46	chr3:150305000-150318400	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr3:150305200-150317600	Weak transcription	A549	lung
48	chr3:150306200-150318000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr3:150306200-150320000	Weak transcription	Left Ventricle	heart
50	chr3:150306400-150316400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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