Variant report

Variant	rs9290034
Chromosome Location	chr3:158889328-158889329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11717685	0.92[YRI][hapmap];0.93[AFR][1000 genomes]
rs13314232	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs35582286	0.93[AFR][1000 genomes]
rs4269119	0.92[YRI][hapmap];0.91[AFR][1000 genomes]
rs4355325	0.86[EUR][1000 genomes]
rs4469016	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4680493	0.91[CHB][hapmap];0.93[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6765003	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs6789328	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs73164385	0.91[AFR][1000 genomes]
rs9859695	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv3426016	chr3:158676623-158979242	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv491927	chr3:158692653-158952780	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1012602	chr3:158800182-159031618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1010828	chr3:158802474-158894319	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158884600-158889800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:158886600-158889400	Enhancers	HUVEC	blood vessel
3	chr3:158887400-158889400	Enhancers	HSMMtube	muscle
4	chr3:158887400-158889400	Enhancers	NHLF	lung
5	chr3:158887400-158889600	Enhancers	Osteobl	bone
6	chr3:158887400-158890000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:158888200-158889400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr3:158888400-158889400	Enhancers	A549	lung
9	chr3:158888600-158889600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:158888600-158893000	Weak transcription	Stomach Mucosa	stomach
11	chr3:158889000-158889400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:158889000-158889400	Enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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