Variant report

Variant	rs9291159
Chromosome Location	chr4:3066932-3066933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:3063869..3067673-chr4:3071743..3074238,3	K562	blood:
2	chr4:3066825..3068832-chr4:3075011..3077801,2	K562	blood:
3	chr4:3065221..3068395-chr4:3071743..3074538,3	K562	blood:
4	chr4:3066058..3068387-chr4:3069883..3072279,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197386	Chromatin interaction
ENSG00000251075	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10000252	1.00[CEU][hapmap]
rs10002065	1.00[CEU][hapmap]
rs10009229	1.00[CEU][hapmap]
rs10009935	1.00[CEU][hapmap]
rs10010375	1.00[CEU][hapmap]
rs10011127	1.00[CEU][hapmap]
rs10011412	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10014333	1.00[CEU][hapmap]
rs10016755	1.00[CEU][hapmap]
rs1419036	1.00[CEU][hapmap]
rs16843127	1.00[ASN][1000 genomes]
rs16843866	1.00[CEU][hapmap]
rs16843869	1.00[CEU][hapmap]
rs2471343	1.00[CEU][hapmap]
rs2515931	1.00[CEU][hapmap]
rs2515934	1.00[CEU][hapmap]
rs28431418	0.93[EUR][1000 genomes]
rs363138	1.00[CEU][hapmap]
rs61791252	0.90[AFR][1000 genomes]
rs61791253	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61791255	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61791257	1.00[ASN][1000 genomes]
rs61791258	1.00[ASN][1000 genomes]
rs61791259	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61792460	1.00[ASN][1000 genomes]
rs61792461	1.00[ASN][1000 genomes]
rs61792462	1.00[ASN][1000 genomes]
rs73086139	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73086140	1.00[ASN][1000 genomes]
rs73086144	1.00[ASN][1000 genomes]
rs73086145	1.00[ASN][1000 genomes]
rs7674896	1.00[ASN][1000 genomes]
rs7688282	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7693317	1.00[CEU][hapmap]
rs9991144	1.00[CEU][hapmap]
rs9993542	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv461163	chr4:2906285-3234980	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	nsv593437	chr4:2906285-3234980	Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
5	esv13277	chr4:3059756-3069436	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3048200-3075200	Weak transcription	Right Atrium	heart
2	chr4:3049600-3074800	Weak transcription	Lung	lung
3	chr4:3058200-3075200	Weak transcription	Psoas Muscle	Psoas
4	chr4:3060800-3074800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:3061000-3074800	Weak transcription	Spleen	Spleen
6	chr4:3061600-3068400	Weak transcription	Primary B cells from cord blood	blood
7	chr4:3061600-3075000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:3062200-3075000	Weak transcription	Adipose Nuclei	Adipose
9	chr4:3062600-3074000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:3062600-3074000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:3063800-3075200	Weak transcription	Right Ventricle	heart
12	chr4:3064400-3075000	Weak transcription	Fetal Intestine Small	intestine
13	chr4:3064800-3074800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr4:3064800-3075000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr4:3065200-3068800	Weak transcription	Primary monocytes fromperipheralblood	blood

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