Variant report

Variant	rs9292071
Chromosome Location	chr5:54061132-54061133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10051233	0.83[AMR][1000 genomes]
rs16883502	0.83[AMR][1000 genomes]
rs6880771	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54057400-54062400	Weak transcription	HMEC	breast
2	chr5:54057400-54062600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:54057800-54062000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:54059600-54061200	Enhancers	Primary B cells from peripheral blood	blood
5	chr5:54059600-54061200	Enhancers	HSMMtube	muscle
6	chr5:54059800-54061200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:54060000-54061200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:54060000-54061400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:54060200-54061600	Weak transcription	Primary B cells from cord blood	blood
10	chr5:54060400-54061200	Enhancers	HSMM	muscle
11	chr5:54060600-54070000	Weak transcription	Fetal Muscle Leg	muscle
12	chr5:54061000-54061200	Enhancers	Aorta	Aorta
13	chr5:54061000-54061200	Enhancers	Pancreas	Pancrea
14	chr5:54061000-54070400	Weak transcription	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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