Variant report

Variant	rs9292072
Chromosome Location	chr5:54065445-54065446
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:53812258..53815199-chr5:54063024..54066576,5	MCF-7	breast:
2	chr5:53813072..53814349-chr5:54064617..54065503,4	MCF-7	breast:
3	chr5:53812978..53814085-chr5:54064609..54065613,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178996	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10036257	0.82[ASN][1000 genomes]
rs10036606	0.82[ASN][1000 genomes]
rs10039924	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10042288	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10042394	0.82[ASN][1000 genomes]
rs10042495	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10045175	0.82[ASN][1000 genomes]
rs10045765	0.82[ASN][1000 genomes]
rs10045790	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10050561	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10053168	0.85[ASN][1000 genomes]
rs10057871	0.82[ASN][1000 genomes]
rs10058571	0.82[ASN][1000 genomes]
rs10058862	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10061958	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066294	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10066622	0.82[ASN][1000 genomes]
rs10068073	0.94[ASN][1000 genomes]
rs10071183	0.93[ASN][1000 genomes]
rs10073662	0.93[ASN][1000 genomes]
rs10073721	0.93[ASN][1000 genomes]
rs10073837	0.96[ASN][1000 genomes]
rs10434559	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10461588	0.85[ASN][1000 genomes]
rs10471923	0.82[ASN][1000 genomes]
rs1073709	0.82[ASN][1000 genomes]
rs10805463	0.85[ASN][1000 genomes]
rs10805469	0.81[ASN][1000 genomes]
rs10940427	0.88[EUR][1000 genomes]
rs10940428	0.82[ASN][1000 genomes]
rs11950757	0.96[ASN][1000 genomes]
rs11959080	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12514244	0.82[ASN][1000 genomes]
rs12515327	0.81[ASN][1000 genomes]
rs12520494	0.81[ASN][1000 genomes]
rs12522199	0.82[ASN][1000 genomes]
rs13155441	0.82[ASN][1000 genomes]
rs13167527	0.82[ASN][1000 genomes]
rs13173669	0.82[ASN][1000 genomes]
rs13180287	0.82[ASN][1000 genomes]
rs13186826	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16883428	0.86[ASN][1000 genomes]
rs1867685	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4242044	0.93[ASN][1000 genomes]
rs4242045	0.82[ASN][1000 genomes]
rs4242046	0.81[ASN][1000 genomes]
rs4242047	0.81[ASN][1000 genomes]
rs4282277	0.94[ASN][1000 genomes]
rs4289528	0.81[ASN][1000 genomes]
rs4290968	0.85[ASN][1000 genomes]
rs4292417	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4298212	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4320207	0.81[ASN][1000 genomes]
rs4336310	0.85[ASN][1000 genomes]
rs4356994	0.93[ASN][1000 genomes]
rs4362906	0.82[ASN][1000 genomes]
rs4457032	0.85[ASN][1000 genomes]
rs4498213	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4515247	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4519880	0.82[ASN][1000 genomes]
rs4527555	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4527556	0.82[ASN][1000 genomes]
rs4591702	0.82[ASN][1000 genomes]
rs4610422	0.82[ASN][1000 genomes]
rs4865870	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4865872	0.93[ASN][1000 genomes]
rs4865873	0.85[ASN][1000 genomes]
rs4865874	0.85[ASN][1000 genomes]
rs4865875	0.82[ASN][1000 genomes]
rs4865876	0.82[ASN][1000 genomes]
rs59595173	0.94[ASN][1000 genomes]
rs59664922	1.00[ASN][1000 genomes]
rs60548640	0.97[ASN][1000 genomes]
rs6450247	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6450248	1.00[ASN][1000 genomes]
rs6450251	0.82[ASN][1000 genomes]
rs6450252	0.82[ASN][1000 genomes]
rs6450253	0.82[ASN][1000 genomes]
rs6860729	0.94[ASN][1000 genomes]
rs6863705	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6867867	0.93[ASN][1000 genomes]
rs6892315	0.93[ASN][1000 genomes]
rs6899052	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73126822	1.00[ASN][1000 genomes]
rs73126828	1.00[ASN][1000 genomes]
rs73126830	1.00[ASN][1000 genomes]
rs7446423	0.82[ASN][1000 genomes]
rs7709225	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7709401	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7726707	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7728303	0.82[ASN][1000 genomes]
rs9292073	0.93[ASN][1000 genomes]
rs9292074	0.82[ASN][1000 genomes]
rs9687636	0.82[ASN][1000 genomes]
rs9968754	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54060600-54070000	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:54061000-54070400	Weak transcription	NHLF	lung
3	chr5:54061200-54067000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:54064200-54067000	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links