Variant report

Variant	rs9293931
Chromosome Location	chr6:74188512-74188513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs671735	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv886158	chr6:74126084-74436825	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
4	nsv1027968	chr6:74155378-74521923	Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv538305	chr6:74155378-74521923	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv1017716	chr6:74173173-74401162	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9293931	MTO1	cis	Skin Sun Exposed Lower leg	GTEx
rs9293931	MTO1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74172200-74189600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:74172200-74189600	Weak transcription	Stomach Mucosa	stomach
3	chr6:74172200-74197200	Weak transcription	Fetal Heart	heart
4	chr6:74172200-74229200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:74173400-74199000	Strong transcription	Fetal Thymus	thymus
6	chr6:74173600-74198800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:74173800-74198800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:74173800-74206200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:74174000-74193600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:74175200-74198800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:74175200-74199200	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr6:74175400-74199000	Strong transcription	Stomach Smooth Muscle	stomach
13	chr6:74175600-74198600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:74175600-74199000	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:74175600-74199000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:74175800-74196800	Strong transcription	Liver	Liver
17	chr6:74175800-74197400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:74175800-74198000	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:74175800-74198800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:74175800-74198800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:74175800-74198800	Strong transcription	Placenta	Placenta
22	chr6:74175800-74199000	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr6:74175800-74199200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:74175800-74201000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:74176000-74192200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:74176000-74192200	Strong transcription	Fetal Lung	lung
27	chr6:74176000-74198800	Strong transcription	Brain Anterior Caudate	brain
28	chr6:74176000-74198800	Strong transcription	Duodenum Mucosa	Duodenum
29	chr6:74176000-74198800	Strong transcription	Fetal Intestine Large	intestine
30	chr6:74176000-74199000	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:74176000-74199000	Strong transcription	Adipose Nuclei	Adipose
32	chr6:74176000-74199200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:74176600-74197400	Weak transcription	Fetal Brain Male	brain
34	chr6:74177600-74199000	Strong transcription	Dnd41	blood
35	chr6:74178200-74189400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr6:74178800-74189600	Weak transcription	HSMMtube	muscle
37	chr6:74179000-74188600	Weak transcription	HUVEC	blood vessel
38	chr6:74179000-74189400	Weak transcription	K562	blood
39	chr6:74179000-74189600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:74179600-74189200	Weak transcription	Hela-S3	cervix
41	chr6:74180600-74199000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:74181400-74192400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:74181400-74199000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr6:74181600-74199000	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr6:74181600-74199000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:74181800-74214800	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr6:74182000-74192200	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr6:74182200-74196400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr6:74182200-74198800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:74182400-74192400	Strong transcription	Primary T helper naive cells from peripheral blood	blood

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